NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATC
CGCGGAATTCCACCGACGCTGCGGTGATAGCATGTGAGCCAGGAACCTAG
CTCTTCCGAGGGAGCATAGCGTGTGTAGCAGAGTGAGGGAGGACTTCAGA
TACAATGTAACTGATCAGCGGAGCTAGGTGTGGGTGTGCGCTGGGCAACC
TCTGCTTGGAATGAGAGGAAAGTGGCTGTTTCTGATGAGGGCAGCTAGGG
TGTAACAGGAACCTGTGCAAATAGCAGCTTGCCTGCTTCTGGGAAAGGAC
ACAGAGACAGAAACCAAAAGGACTCTCCCTCCTCCCTTCCGTGTCTTTCC
TCACTCTTTCGCCTCCCTTCCCTCCCTCCCTTCTCTCTCCCTTTAATATC
TAAAGCATGTGGCAATGGTTGGTTGAGAAACAAGCTCATTGAAAAGGAGC
AAACGATTTCACCCATGANACAATTGCTTGAATCCAGGAATCCCTACCAC
AGGCAGCACCTAGGTGAGCTTTCTGCTTTGACTTCTGACCTCTGGCGATC
CAACTGTAACAGGACCTGCTTCCTGATTGCTTTGGAGGGGGGTTGTTTCC
AAGGCAAGCCCAAACCGGCCAAGGTAAAAATGTTTCAAAACATCCTTTTT
TTTCTCCCCCTTGGGGCTGGTGACAGGGAACAATGGTGCTCCTTATTAAG
GGGCCCGCTCCCTTTTTTTATTATATTTCGGCAACTTGGTTTTTCTTTCC
TTTCCTCATCAGGTTCTATGTCCCTGTTTTTCCCTCCTTTTTG

NTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCGCACTTCCTAATAGCTCCAAGAGAGAAAAT
CAAGGTTCAGAGAAGTTGCACAAGTCACCTGAGACAGCACAGTTGGCTCC
TACCTGATATGGGAACTTGGGAACTGGTGGGTTTGCTAAGAATAAAGTGG
TGGTGAGGTTTTTAGGGCTGGGGCCATGGGCTTGCCACAGAGCTGCTTAG
TTCTTGACTCTGTTGAGTCCTGGGGATCTGAGAAGGCGGAGGCGAGCCAA
TCAGCAATCCCTGCAATGCTGCGGCTCCTGTCTCCCATTGCGACTGTGTC
GCCATGCAGACAATTCTTAGCATAATTTCCCACTTACTGCGGGTGCCTGA
CGTCATATTCCCTACCCCCTGCCCCATGGTCTGCACCCCCATCCTGATAA
TTTTTTCTAGCTATTTTTCTGTCTCAAGACTGACTTGAGCCAGTGAGAAA
TAGGGGTGGGTCTAGCCCCCTCTTGTACATGTGGACCCCCGGCTCTTCTG
TGGTTCTGGTGGCTACTAATATTACCTGGTTTTTATGGAACCCCTTGTTT
TTGTCCCAAATTCCCTTTTTTTTGGTACAGGATACTGTACAGTTCCAACG
AACAATCTCCTTTTTCCGCCCCTTTTCTTACCCTTTTCCTCCCTATTTCC
CCCCCTTTTTTTTTTATTATTTCTCCCTCTTTTAATCTCTTTTTGTTTCA
TATATTACTTTCTTGTTTTATTCCCCCCATTTTGGCCGCTCCCTTTT

Query= MSMg01no375_l23.b1 MSMg01no375_l23.b1 CHROMAT_FILE:
MSMg01no375_l23.b1 PHD_FILE: MSMg01no375_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:26 2005
         (448 letters)



>mm_chr5_112264794_112265641
          Length = 848

 Score =  837 bits (433), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccgacgctgcggtgatagcatgtgagccaggaacctagctcttccgagggag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccgacgctgtggtgatagcatgtgagccaggaacctagctcttccgagggag 264

                                                                       
Query: 65  catagcgtgtgtagcagagtgagggaggacttcagatacaatgtaactgatcagcggagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catagcgtgtgtagcagagtgagggaggacttcagatacaatgtaactgatcagcggagc 324

                                                                       
Query: 125 taggtgtgggtgtgcgctgggcaacctctgcttggaatgagaggaaagtggctgtttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtgtgggtgtgcgctgggcaacctctgcttggaatgagaggaaagtggctgtttctg 384

                                                                       
Query: 185 atgagggcagctagggtgtaacaggaacctgtgcaaatagcagcttgcctgcttctggga 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgagtgcagctagggtgtaacaggaacctgtgcaaatagcagcttgcctgcttctggga 444

                                                                       
Query: 245 aaggacacagagacagaaaccaaaaggactctccctcctcccttccgtgtctttcctcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggacacagagacagaaaccaaaaggactctccctcctcccttccgtgtctttcctcac 504

                                                                       
Query: 305 tctttcgcctcccttccctccctcccttctctctccctttaatatctaaagcatgtggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctttcgcctcccttccctccctcccttctctctccctttaatatctaaagcatgtggca 564

                                                                       
Query: 365 atggttggttgagaaacaagctcattgaaaaggagcaaacgatttcacccatganacaat 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 atggttggttgagaaacaagctcattgaaaaggagcaaacgatttcacccatgaaacaat 624

                                   
Query: 425 tgcttgaatccaggaatccctacc 448
           ||||||||||||||||||||||||
Sbjct: 625 tgcttgaatccaggaatccctacc 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_l23.g1 MSMg01no375_l23.g1 CHROMAT_FILE:
MSMg01no375_l23.g1 PHD_FILE: MSMg01no375_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:26 2005
         (403 letters)



>mm_chr5_112457834_112458636
          Length = 803

 Score =  679 bits (351), Expect = 0.0
 Identities = 390/403 (96%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctaatagctccaagagagaaaatcaaggttcagagaagttgcacaagtcacctgaga 60
           |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 602 ttcctaatagctccaagagagaaagtcaaggttcaaagtagttgcacaagtcacctgaga 543

                                                                       
Query: 61  cagcacagttggctcctacctgatatgggaacttgggaactggtgggtttgctaagaata 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 542 cagcacagttggctcctacctgatatgggaacttggaaactggtgggtttgctaagaata 483

                                                                       
Query: 121 aagtggtggtgaggtttttagggctggggccatgggcttgccacagagctgcttagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aagtggtggtgaggtttttagggctggggccatgggcttgccacagagctgcttagttct 423

                                                                       
Query: 181 tgactctgttgagtcctggggatctgagaaggcggaggcgagccaatcagcaatccctgc 240
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 422 tgactccgttgagtcctggggatctgagaaggcagaggcgagccaatcagcaatctctgc 363

                                                                       
Query: 241 aatgctgcggctcc-tgtctcccattgcgactgtgtcgccatgcagacaattcttagcat 299
           ||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatgctgaggc-ccgtttctcccattgcgactgtgtcgccatgcagacaattcttagcat 304

                                                                       
Query: 300 aatttcccacttactgcgggtgcctgacgtcatattccctaccccctgccccatggtctg 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 aatttcccacttactgcgggtgcctgacgtcatattccccaccccctgccccatggtctg 244

                                                      
Query: 360 cacccccatcctgataattttttctagctatttttctgtctca 402
           ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 243 cacccccatcctgataattttttctagctgtttttctgtctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)