BAC Information

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BAC

Clone NameMSMg01-375O19
Chromosome5 (Build37)
Map Location 101,487,696 - 101,487,979
singlet/doubletsinglet
Overlap genenone
Upstream geneEnoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375O19.T7 (MSMg01no375_o19.b1)MSMg01-375O19.TJ (MSMg01no375_o19.g1)
ACCAG481363AG481364
length859769
length of high quality
(start - end)
---285 (253 - 537)
definitionCHROMAT_FILE: MSMg01no375_o19.b1 PHD_FILE: MSMg01no375_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:40 2005CHROMAT_FILE: MSMg01no375_o19.g1 PHD_FILE: MSMg01no375_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCNGGAATTCTATGTTCTTTTCCCCTAGGGGTGACCCTTGTCCTCCCCC
TTTGAGTAGGTTTGTGAATTTTCGTATACAGTTATTTCTCGGATTTTTAT
ATCTCTATTTCCTAGCCTGGTTACGTACGTTCATTATCATACACTGCCTG
TCCCCACTTATAATTACTTACGCTGATCTGTGAGATTTCTCGTGTTCTTT
TTGGGACTCCATTGGATCATTAGCGATGTGTTCCTCGGAGACTGGCTTGT
GAGAAGGATATGTCACCATGCCATGGTCTGTTGAGTAGCATTCTTTTCTC
GCATGCTGTTGTTGTGAGAGGCCCTTACCGTGTGCTNGGAGCTCCATGGT
GCGATGTTCCCCCGACATTTGTTATCCAGATGCAAAATTGCTAATAGGAG
ACTGTGCATATTACGCTTAACACCTATGCTTCGCCTTGTGACGCTTTGCT
GGTTCGACACGTAAGACCTGTGTAGCGCTTTTCGCTGGTCTATGGGTGAT
CTTTTGCTTTGTTGTTGCTTTCCTATCAATAGAAATTCCGTCAGATTACT
TTCCCATTCTGGGTTGCGTCCTTGCCCCTCTCTTTCTAGCACTCTAGTTA
ATTTGTTTCCACCCCCCCCGGTTTCTTTCCGTAAGAAATTATTATATTAT
AGTATTCTACGCAGGGGGGCCCGACATCTTCACTTCTTATTTCCCTCCCC
CCCCACCTTTTTTTTTTTTCAACTACTTACTTTCTTCTTTTATCCTCCTC
TTCTTCCTTCCCCCCCCTCTTTTCTCCTCCCCTATTCCTCGCTCTATATT
CTTCTCTTG
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTTTACTTCTTAACACATTAG
AAAGGACTCTTGAATGCCACTACCCTGGCGCCTTTTATTTTCCGAGAGTG
CTTGAAATACATCTCGTAATGAATATAAAAATAAAAATGATCCCTTTCTG
ATGACCCTGCTAACCCTAAGGAATAAAATCAATAGAAGTGCAATTAATTT
GGATTCATTTGGCCTGAAGAATCATGAGGCAAAATAAGGAAGCCTGTTTG
CCAGGGTGTGTGATGTGGCTTTTGGCTGGGAGTCCTGCTTCTGAAAGCAT
CCGCCTCAGATCCAGCAGCCATAATAAACTCCCCGTGTCCGATATACATA
AATCCTTGTACAAACCAAGACGGCAATGGTCTCCTCTCTCCAACCTGCAC
ATAACCACAAGTGTAGAATATTAATTATGCCTCAGAAAATTGCATTAAGG
CTTACAAGACATTGTTCTGTAACCTTTTAACTATTTTAAAAAAAAAACTT
TACTATCTACAGAGCTGGGACTCTCCAAGCACATTAAACCCAGCGCTCCA
AAAAATGGATGAAAAGGCGGCCTTGGGTCTGAACATGCATTCCCCCATGT
AGGAAGTTAAAAAAGGACTGAACGACCTAAAGGGTTGTCCCCTTTTAAAA
AAATTCACTATTTTTCCCCCCAACCCCTCCAAATTCTCCGAATTTACTCC
CCCCCCTATAAAAACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_o19.g1 MSMg01no375_o19.g1 CHROMAT_FILE:
MSMg01no375_o19.g1 PHD_FILE: MSMg01no375_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:40 2005
         (285 letters)



>mm_chr5_101487496_101488180
          Length = 685

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatttggcctgaagaatcatgaggcaaaataaggaagcctgtttgccagggtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attcatttggcctgaagaatcatgaggcaaaataaggaagcctgtttgccagggtgtgtg 425

                                                                       
Query: 61  atgtggcttttggctgggagtcctgcttctgaaagcatccgcctcagatccagcagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgtggcttttggctgggagtcctgcttctgaaagcatccgcctcagatccagcagccat 365

                                                                       
Query: 121 aataaactccccgtgtccgatatacataaatccttgtacaaaccaagacggcaatggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aataaactccccgtgtccgatatacataaatccttgtacaaaccaagacggcaatggtct 305

                                                                       
Query: 181 cctctctccaacctgcacataaccacaagtgtagaatattaattatgcctcagaaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctctctccaacctgcacataaccacaagtgtagaatattaattatgcctcagaaaattg 245

                                                       
Query: 241 cattaaggcttacaagacattgttctgtaaccttttaactattt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cattaaggcttacaagacattgttctgtaaccttttaactattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)