Query= MSMg01no376_e03.b1 MSMg01no376_e03.b1 CHROMAT_FILE:
MSMg01no376_e03.b1 PHD_FILE: MSMg01no376_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:07 2005
(609 letters)
>mm_chr5_3504236_3505244
Length = 1009
Score = 1112 bits (575), Expect = 0.0
Identities = 596/605 (98%), Gaps = 4/605 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaagatcatgacaaagaagtgacttgtgacttttatttagttgtatgtgtacat 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 209 gaattcaaagatcatgaaaaagaagtgacttgtgacttttatttagttgtatgtgtgcat 268
Query: 65 gtgcacgtctccatggcatgtttacatgggtcagaggacaactttgggggcttgactctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtgcacgtctccatggcatgtttacatgggtcagaggacaactttgggggcttgactctc 328
Query: 125 tccttccttccagcacgtaggacctaggggtcaaacttgggttgtcagactcggcagcaa 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 329 ----tccttccagcacgtaggacctaggggtcaaacttgggttgtcagactcagcagcaa 384
Query: 185 gccactaagccatctctccagaccaagaggtggtttccaaagctcttatctccatcccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccactaagccatctctccagaccaagaggtggtttccaaagctcttatctccatcccca 444
Query: 245 taatgtcactttcacttactggcttagcatgtcttcatcgaggggatggatacacttgtg 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 taatgtcactttcacttactggcttagcatgtcttcatcgaggggatgaatacacttgtg 504
Query: 305 tattcctctgaagtcaggtgcaaggagaaaatgtcttttgcatgcctaggtgcagccagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattcctctgaagtcaggtgcaaggagaaaatgtcttttgcatgcctaggtgcagccagt 564
Query: 365 ggcccttgctcagttagactcagttctaggcgtctgtgcacagagagtccttgagaatca 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtccttgctcagttagactcagttctaggcgtctgtgcacagagagtccttgagaatca 624
Query: 425 cttccatgacgttttctctcaatggtcacttagtctgtctatctatgtatatggatagtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttccatgacgttttctctcaatggtcacttagtctgtctatctatgtatatggatagtt 684
Query: 485 gtctccgtagatagactcatttgagggtttaacactgcacaaaaaaagaccatgtgattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtctccgtagatagactcatttgagggtttaacactgcacaaaaaaagaccatgtgattt 744
Query: 545 agtcatctctggtttaattttgattctcaactttgggattaaaactaacggggtactccg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agtcatctctggtttaattttgattctcaactttgggattaaaactaacggggtactccg 804
Query: 605 cttcc 609
|||||
Sbjct: 805 cttcc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_e03.g1 MSMg01no376_e03.g1 CHROMAT_FILE:
MSMg01no376_e03.g1 PHD_FILE: MSMg01no376_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:07 2005
(473 letters)
>mm_chr5_3667316_3668188
Length = 873
Score = 884 bits (457), Expect = 0.0
Identities = 469/473 (99%)
Strand = Plus / Minus
Query: 1 cagtgcatgggcctcagaattttgcacactaatgactgtttgcctctgctttgtttctcc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagtgcatgagcctcagaattttgcacactaatgactgtttgcctctgctttgtttctcc 614
Query: 61 ttgcatttgatttccctgacaatgtattcatcttcccgtattgcgggtatcagtgtaagc 120
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttccatttgatttccctgccaatgtattcatcttcccgtattgcgggtatcagtgtaagc 554
Query: 121 tacctccagtatgatttggaaccagctcgagtgagtcagtcatcgcaggagaggatggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tacctccagtatgatttggaaccagctcgagtgagtcagtcatcgcaggagaggatggtc 494
Query: 181 agcattacatgaaggaaacacaaactcaaaggtagacaccatccttagccacacagtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agcattacatgaaggaaacacaaactcaaaggtagacaccatccttagccacacagtgcc 434
Query: 241 agtgctaggctgtctcaggagcatcagcacaccctaggcaattgctaccagccagctgag 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtgctaggctgtctcaggaacatcagcacaccctaggcaattgctaccagccagctgag 374
Query: 301 gacacaccaaacctttgggagttaaggggttccctctgagagttggagggtgactcttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gacacaccaaacctttgggagttaaggggttccctctgagagttggagggtgactcttag 314
Query: 361 gagctgctaagtctctcgtgataagctcccagctttctggggtattgagcccgggttcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gagctgctaagtctctcgtgataagctcccagctttctggggtattgagcccgggttcag 254
Query: 421 agatcctgagtgtattcaggtttagggatatttgtttctggggtttctgtgaa 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agatcctgagtgtattcaggtttagggatatttgtttctggggtttctgtgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
