CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTTCATTCCTTGATCTTTTTTTCAAACTTCAGTTGATATACA
CAGGTGAACTTGGTAACACGTTGACATCCCGAGAGTCAGTGAATCTCAGG
GGCCTTCAGATCAACAGCACCCCACCATCATTAGTTTAGAAGTAAGAGCA
GTTATAATCCAATAAAAACCCAAGCCCACACCTGAGGAGCCTTGATAAAT
CATCCTCTATGACAAGTTGTTTGGATCTGAGTTCTAGGGGGGGGGGCTCT
AGCCTTTTTGGAGCACATGATTATTTTAATTATGCATAAAAATATTGTCC
CAAAGAATAAATGTAGAGAATATATCTATCCTTGAAAAAGATATCGGAGC
TGAAAGCAGAATGAATCAAAAACAAACATCACAGATAGAGCTACGTAGCC
CAGATTAGGCTGTGTTGCAGACTTTTCCTGGACCGTTACAAAAATAAAGC
CCATCCATCTGTCAAAACAACTGCTCCATGCATGGAAATTAGAACAGCAC
TGAGGTGTTTTTAACTAACTTCCGATCCTTACGCTTTCTACAAAAGAATA
TAATTTACCTACAATTCCAATTACCTCTTTCCCTGTTCTTAAACTATGGA
TAAAATATTGAGAATTTAACCTAAATAAAGAAGCGGCTTAAAAAAACAAA
TGTGGAGGAGACAGTGAACAGGAACCATCTCTAT

ATGTTGGTGGGTTTGGNCCCCCCGCCCCTCATTTTGTGTTTTTTTCGTTC
TGGTATCCCTCGCTGTCCCAGCCCACTGCCCTGGTTAGTCCCCTGGTTGT
GTGCATTCATCGCGCCCCCCCAAAAACTAATTACTTCTCTCCAACTTTGT
TTTATCTTTTGTTCTTTTTTCCTTCTTCTTTGTNNNNGTGCNCNNNAGAG
GNTTTNNNNNCGCTAGGCTAAGGGGGTAGCCCTGGCGGGCCGGGCCTGGG
GTTCTTTCGAAACATTTTAGGGGGGAACCCTTATTAGAAAGGAATTCGGC
GGGAATTCCCAAGAAATCAGAGGAAGCTCATTGTAGGGACAAATCTGGAC
ACTCATAAAACGAGGCCTATTTTTAAAAACACCCAGAAGGCTAACTGGTT
CCCGGAAAAGGGGAAAGGGGCAAGGTTTCAAAAAAGGGTAATTAAAACTT
AATTGGGGGGGGGGTTTCCCCCCGGGGGAAAAAAGAAGGAAAAAGGCAGG
GGGGAAAAAAANNATTTNCCTTCCTCCCCGCCCCCCAAA

Query= MSMg01no376_i01.b1 MSMg01no376_i01.b1 CHROMAT_FILE:
MSMg01no376_i01.b1 PHD_FILE: MSMg01no376_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:25 2005
         (645 letters)



>mm_chr5_13469183_13470224
          Length = 1042

 Score = 1112 bits (575), Expect = 0.0
 Identities = 624/645 (96%), Gaps = 11/645 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttttcattccttgatctttttttcaaacttcagttgatatacacaggtgaac 64
           ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 842 gaattcatttttcaaaccttgatcttttcttcaaacttcagttgatatacacaggtgaac 783

                                                                       
Query: 65  ttggtaacacgttgacatcccgagagtcagtgaatctcaggggccttcagatcaacagca 124
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 782 ttggtaacaccttgacatcccgagagtcagtgaatctca-gggccttcagatcaacagca 724

                                                                       
Query: 125 ccccaccatcattagtttagaagtaagagcagttataatccaataaaaacccaagcccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccccaccatcattagtttagaagtaagagcagttataatccaataaaaacccaagcccac 664

                                                                       
Query: 185 acctgaggagccttgataaatcatcctctatgacaagttgtttggatctgagttctaggg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 663 acctgaggagccttgataaatcatcctctatgacaagttgtttggatctgagttcta--g 606

                                                                       
Query: 245 gggggggctctagcctttttggagcacatgatt----attttaattatgcataaaaatat 300
            |||||||||||||||||||||||||||||| |    |    ||||||||||||||||||
Sbjct: 605 tggggggctctagcctttttggagcacatgaatagaaa----aattatgcataaaaatat 550

                                                                       
Query: 301 tgtcccaaagaataaatgtagagaatatatctatccttgaaaaagatatcggagctgaaa 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtcccaaagaataaatgtagagaacatatctatccttgaaaaagatatcggagctgaaa 490

                                                                       
Query: 361 gcagaatgaatcaaaaacaaacatcacagatagagctacgtagcccagattaggctgtgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 489 gcagaatgaatcaaaaacaaacatcacagatagagctacgtagcccagattaggctctgt 430

                                                                       
Query: 421 tgcagacttttcctggaccgttacaaaaataaagcccatccatctgtcaaaacaactgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgcagacttttcctggaccgttacaaaaataaagcccatccatctgtcaaaacaactgct 370

                                                                       
Query: 481 ccatgcatggaaattagaacagcactgaggtgtttttaactaacttccgatccttacgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccatgcatggaaattagaacagcactgaggtgtttttaactaacttccgatccttacgct 310

                                                                       
Query: 541 ttctacaaaagaatataatttacctacaattccaattacctctttccctgttcttaaact 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 309 ttctacaaaagaatataatttacctacaattccaattacctcttcccctgttcttaaact 250

                                                        
Query: 601 atggataaaatattgagaatttaacctaaataaagaagcggctta 645
           |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 249 atggataaaatagtgagaatttaacctaaataaagaagcggctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1042
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1032
Effective search space:   655320
Effective search space used:   655320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)