BAC Information

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BAC

Clone NameMSMg01-376K02
Chromosome5 (Build37)
Map Location 16,111,515 - 16,291,513
singlet/doubletdoublet
Overlap geneHgf, EG668131
Upstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K02.T7 (MSMg01no376_k02.b1)MSMg01-376K02.TJ (MSMg01no376_k02.g1)
ACCAG481902AG481903
length742747
length of high quality
(start - end)		512 (45 - 556)527 (75 - 601)
definitionCHROMAT_FILE: MSMg01no376_k02.b1 PHD_FILE: MSMg01no376_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:34 2005CHROMAT_FILE: MSMg01no376_k02.g1 PHD_FILE: MSMg01no376_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,291,190 - 16,291,513)(16,111,515 - 16,112,041)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTCAAACATACTACTGCCTCAGTTCTTTGCAATTGGACATTTTG
AACTTGAACATCCCCAAGTCTTAAGTTCTGAACTCCTTTAAGGTTTGATT
CATTTACTACTTTCTTATGGTTATCTATACCATGTGATTCCTTCCCCTCA
TATTTCTTTCACTGTCTGATTTTCTTTATAGTACTCATTTTCTTTTAACA
TACCGTGTGATTGTTTAAAGTATGATACCTGTGGTCTGTTACTACTCCCT
GATATGTAAACAATTTTTAAAGGCTATTATTTTTCTTTTCTTCAAGAAGG
TATCTTTAAGAACTGGAAGAATCGAGAGGACAGGTGTCCGCCTGGCTTGG
GAGGCAGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTTGGTTCCGGGACT
CAGCAGAACTTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGA
ACCGGACAGCTTCTGGGATGGGCAGAAGCACAGAGCCGCTGAGGCAGCAG
CCTGGGCGGGCCGCAGATAACCGGCCACCATCCGGACCAGAGGACAGGTG
TCCGCCTGGCTCGGGAGACGGCCTCGGCCTCAGGAGCAGCGGTCACCATC
TTGGGTCCAGGACTTCCTGGAACTTAGGATTTTAGTCTGCCCAGGGGAGA
GTCTTTACCACAGAAGCTGAAAGCTTTTTGGGAATTGCCAAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGCAAATGATAAAAATTAGCCTT
TTAGAATAAGTACAGTTAACAAACAAATGCAAAGACCTTAAAACTAACAA
GAAAGAAGGATGAAATATCAAGGGAAAGAGTTTCTAAATATGAAATGGCA
AATGACAAAATTGATTATTGGTACTCAGTAAACAAATGGACAACTCTGTC
TTTCAGTGCTGTACTTCTTTGTGGCAATAGTGTCTACAAGCCAAAATGAA
TGCGAGTGTACATCATGTATATGCATGATGGTACACACACACACACACAC
ACACACACACACACACACACACACATGATTAGTAAAAATACAAAAAGTTG
TGCTGAAGAAATAATGCCACTTTGAGAAAAAAAATCATCTTTAATATTTG
CAAAATTTCATGTTGAGTTAGATGATTTTTTTCCAGTTAACTAGAAGTGC
AATCTTATTTCAGGATATAGGGAAATCAGTTATAATAATAAATAAATATC
TCATATTTACAAATAAGTTATAATTTTGTTGTTGTATTTTATGCCCTCTG
GTTATAGTCTTTCCAATTAATTAATCTTTTCTAATAATCTTTATTTTTCC
TGATTATTAATTTCATATCCTAAAAAGCTGTCCCAGATAACTTCCATGCT
TCATCACCAAAACATACAATTCTACTTTACCAGAAGTTTAGATAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k02.b1 MSMg01no376_k02.b1 CHROMAT_FILE:
MSMg01no376_k02.b1 PHD_FILE: MSMg01no376_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:34 2005
         (512 letters)



>mm_chr5_16290990_16291901
          Length = 912

 Score =  549 bits (284), Expect = e-160
 Identities = 314/324 (96%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagtcaaacatactactgcctcagttctttgcaattggacattttgaacttga 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggaattcacgtcaaacatactactgcctcagttctttgcaattggacattttgaacttga 465

                                                                       
Query: 64  acatccccaagtcttaagttctgaactcctttaaggtttgattcatttactactttctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acatccccaagtcttaagttctgaactcctttaaggtttgattcatttactactttctta 405

                                                                       
Query: 124 tggttatctataccatgtgattccttcccctcatatttctttcactgtctgattttcttt 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 404 tggttatctataccatgtgattccgtcccctcatatttctttcactgtctgattttcttt 345

                                                                       
Query: 184 atagtactcattttcttttaacataccgtgtgattgtttaaagtatgatacctgtggtct 243
           ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 344 atagtactcattttcttttaacataccatgtgattgtttaaagtgtgatatctgtggtct 285

                                                                       
Query: 244 gttactactccctgatatgtaaacaatttttaaaggctattatttttcttttcttcaaga 303
           ||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 284 gttactaatttctgatatgtaaacaatttttaaaggttattatttttcttttcttcagga 225

                                   
Query: 304 aggtatctttaagaactggaagaa 327
           ||||||||||||||||||||||||
Sbjct: 224 aggtatctttaagaactggaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_k02.g1 MSMg01no376_k02.g1 CHROMAT_FILE:
MSMg01no376_k02.g1 PHD_FILE: MSMg01no376_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:34 2005
         (527 letters)



>mm_chr5_16111315_16112241
          Length = 927

 Score = 1004 bits (519), Expect = 0.0
 Identities = 525/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagcaaatgataaaaattagccttttagaataagtacagttaacaaacaaatgcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagcaaatgataaaaattagccttttagaataagtacagttaacaaacaaatgcaaag 260

                                                                       
Query: 61  accttaaaactaacaagaaagaaggatgaaatatcaagggaaagagtttctaaatatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttaaaactaacaagaaagaaggatgaaatatcaagggaaagagtttctaaatatgaa 320

                                                                       
Query: 121 atggcaaatgacaaaattgattattggtactcagtaaacaaatggacaactctgtctttc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 atggcaaatgacaaaattgattattggtactcagtaaacatatggacaactctgtctttc 380

                                                                       
Query: 181 agtgctgtacttctttgtggcaatagtgtctacaagccaaaatgaatgcgagtgtacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgctgtacttctttgtggcaatagtgtctacaagccaaaatgaatgcgagtgtacatc 440

                                                                       
Query: 241 atgtatatgcatgatggtacacacacacacacacacacacacacacacacacacacacac 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtatatgcatgatggtacatacacacacacacacacacacacacacacacacacacac 500

                                                                       
Query: 301 atgattagtaaaaatacaaaaagttgtgctgaagaaataatgccactttgagaaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgattagtaaaaatacaaaaagttgtgctgaagaaataatgccactttgagaaaaaaaa 560

                                                                       
Query: 361 tcatctttaatatttgcaaaatttcatgttgagttagatgatttttttccagttaactag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatctttaatatttgcaaaatttcatgttgagttagatgatttttttccagttaactag 620

                                                                       
Query: 421 aagtgcaatcttatttcaggatatagggaaatcagttataataataaataaatatctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgcaatcttatttcaggatatagggaaatcagttataataataaataaatatctcat 680

                                                          
Query: 481 atttacaaataagttataattttgttgttgtattttatgccctctgg 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttacaaataagttataattttgttgttgtattttatgccctctgg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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