Query= MSMg01no376_k07.b1 MSMg01no376_k07.b1 CHROMAT_FILE:
MSMg01no376_k07.b1 PHD_FILE: MSMg01no376_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:35 2005
(530 letters)
>mm_chr5_16154211_16155140
Length = 930
Score = 965 bits (499), Expect = 0.0
Identities = 518/527 (98%), Gaps = 6/527 (1%)
Strand = Plus / Minus
Query: 7 gaattctcaaactt---tttcataatcttgtttttaatcaagtattaggtttcagcttgt 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattctcaaacttaaat---ataatcttgtttttaatcaagtattaggtttcagcttgt 674
Query: 64 aggattcaatggttcatttgaaaggaatttcgtgacagtgtaactatgtgcacaccagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aggattcaatggttcatttgaaaggaatttcgtgacagtgtaactatgtgcacaccagtg 614
Query: 124 gagttgcttgtaagagggaagtaacttacaaatctaggctgtttctgaaacggatttctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gagttgcttgtaagagggaagtaacttacaaatctaggctgtttctgaaacggatttctg 554
Query: 184 atttctcccactggaaagactccattccaaaaatcataaagtaaaatagtttgaaacaaa 243
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 553 atttctcccactggaaagactccattccaaaaatcataaagtaaactagtttgaaacaaa 494
Query: 244 aacttcttaaacagtggaataatccagtaagagaaacaccagagattattcaatgtcagg 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 493 aacttcttaaacagtggaataatccagtaagagagacaccagagattattcaatgtcagg 434
Query: 304 tttgacataactgcagggttaaagaaacagcataggttgatgaaattttaccaagcattg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgacataactgcagggttaaagaaacagcataggttgatgaaattttaccaagcattg 374
Query: 364 ggcctttttttaaaccaggggacatttgtctggctctgttcgaatccaacaaaacaccat 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcctttttttaagccaggggacatttgtctggctctgttcgaatccaacaaaacaccat 314
Query: 424 gcttcatttggagctaagtccatggtgaactctgtccatacatgctgatttctctaaatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcttcatttggagctaagtccatggtgaactctgtccatacatgctgatttctctaaatt 254
Query: 484 gtcctttaacagaaagagacactatcccacaataccacttttccaaa 530
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtcctttaacagaaagagacactatcccacaataccacttttccaaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_k07.g1 MSMg01no376_k07.g1 CHROMAT_FILE:
MSMg01no376_k07.g1 PHD_FILE: MSMg01no376_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:35 2005
(513 letters)
>mm_chr5_15987894_15988806
Length = 913
Score = 940 bits (486), Expect = 0.0
Identities = 507/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 1 tgaaactaagccaaaataaacttgtctgtttttaaaattatttctgtcaggtatttgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaactaagccaaaataaacttgtctgtttttaaaattatttctgtcaggtatttgtca 260
Query: 61 cagtgacaaacgtctgatggaaacaatgtattcttatgtgacattttcagatagtcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgacaaacgtctgatggaaacaatgtattcttatgtgacattttcagatagtcagtc 320
Query: 121 ctggcagtttatttcttttaactatggcttggccaagagaaatattctgtaacgtcagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcagtttatttcttttaactatggcttggccaagagaaatattctgtaacgtcagac 380
Query: 181 tgtcattctgaaggcatttctcaggatcaaggatagaaaatataaatcataactttttcc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgtcattctgaaagcatttctcaggatcaaggatagaaaatataaatcataacttttccc 440
Query: 241 tctaatgaaaaatgattgaaattattcatcatagacaaataatgatgcaaaattcacata 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tctaatgaaaaatgattgaaattattcatcatagacaaataatgaggcaaaattcacata 500
Query: 301 gttaggagattggtataagctttatatttttatgtcaaataacaaaattaggactaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaggagattggtataagctttatatttttatgtcaaataacaaaattaggactaatgg 560
Query: 361 aaatttttt-agcagtagaaaaataaaaaaatctaaaactctagctatttaaaaatgatc 419
||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 561 aaatttttttagcagtagaaaaataaaata-tctaaaactctagctatttaaaaatgatc 619
Query: 420 aaatattcacagacatacaaaacagaggcaaagaaacattacaatcttgcatacattgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatattcacagacatacaaaacagaggcaaagaaacattacaatcttgcatacattgta 679
Query: 480 ctacacctagtagataaaaatgtgttgaaagaac 513
|||||||||||||||||||||| |||||||||||
Sbjct: 680 ctacacctagtagataaaaatgagttgaaagaac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
