BAC Information

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BAC

Clone NameMSMg01-377H19
Chromosome5 (Build37)
Map Location 43,437,422 - 43,655,417
singlet/doubletdoublet
Overlap geneEG665934, Cpeb2
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377H19.T7 (MSMg01no377_h19.b1)MSMg01-377H19.TJ (MSMg01no377_h19.g1)
ACCAG482556AG482557
length777785
length of high quality
(start - end)		461 (66 - 526)444 (73 - 516)
definitionCHROMAT_FILE: MSMg01no377_h19.b1 PHD_FILE: MSMg01no377_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:41 2005CHROMAT_FILE: MSMg01no377_h19.g1 PHD_FILE: MSMg01no377_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,437,422 - 43,437,879)(43,654,974 - 43,655,417)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCATAGCCTTCCAACGCCCAGCAGAAACGGGCTTTCAAATATTTCTT
TTACAAGTTCACACACAGAAACTTGAAAGTGGATGCTTAGTCACCAAAAT
ACAAGACCTTGTTAAACACAGAGACATCTCTAAAAAGAATGCCAAGAACT
GGTAAATGAATGGATAGAGCTTGGAAGCATTACTGGAGTCCTTCTCTGCC
CAGTTACACCCCTGGCTTAGGAAATCCCAGTATCACAACATTATGAATTC
AGTTTCCCTGCAGGCATGCTCTGTGATGGGACATAGACTCTAAGACTAGG
TATGCAGTCCCAACACCTGAATCTGATGCTTAAGACAGATGCTTCAGTAA
ACTCCTAATCAAAGCCAAAGTGATGATCAGAGACAGGAGGAATTCAGTAG
GCCTGGAACTTGTTCTGCATCTACTTCCCTGTGTCTGGAACTGGCATCTC
CCTTTAGTCCCTCAGCAGTTCTGCAAAATAGGGAAAAACAGCTTGAATTT
ATTGCCTCAGGATACATGGGAAGATGGGTCCTGCAGACCAGGTATAAACT
TTCTCTAAGGTACACTCTCCATTTGGCTAAAAATTAAAAAGGCAGAGTGC
ATTGCATTTAAAATACCTGGGTGTCAATAAAACAAGCTTCTTTATAAACA
AGTTCCAGTTTTTTACCAAACAAGGCGCTCTTTTTCTAATGCTTTATCAA
AATCCCGACCTTTTCCCTTATACTTTC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCAGTCCTCACAGCAGTCCCCCGAGG
CAAGCAGTGTGCTCTGGCTTAGATATTAAGGAATGAAAGTCAAGGTCAGG
TCAAGTACGCTGCTCCAGGTTGTACAGAAAGGTGAGCTGGTGTCAAAGTC
TTATGCTATCCACACACCTCCAAACATGGTGAAGCAAAATGTATCACTAA
ATACTTATCTTTAAAGTGAATAGGGTTAGCTATGCTTACTATAATAAGAA
GCAATGGCTAAGCAACTTAAACACCTGCTCTATAGTGAATTAAATCTAGA
CAATAAAATGCTATACTTTCTTCACCAATCAGTAGTATTTAGTAACTATT
TAATACAGAAGGAGCCTTGTGCCAACATCATTTAATCCCCTGGTTTCCTG
AGAATATAACATGCTAAGAATATAGCTAAACTGCATTTGTTAAAGAAAAA
GTTTCCCTTACCTCCGAGCGCTGTATTTTCCCTTTATTTGGNGACCTTCA
TATCTCATTCTTTAAGAATTCCTCACCCCACCGAGGCACCCAGTTAAATG
ACTCTTTTAACTCTGAAATCTTTTTCCCCCCCAAAAGGCTCTTTTTCTTG
GCCTCGAAAAAAATTGGGATTCCAAAAATTACCTTTTTTTTTTTCCTAAA
ACCCTTGTTAAAAAGTTAATTTTCCGGTTGTTTTTTCTTCTTTGTGGGCA
ATATTGTCCTTATTGGGTCCCTATATAAAAAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_h19.b1 MSMg01no377_h19.b1 CHROMAT_FILE:
MSMg01no377_h19.b1 PHD_FILE: MSMg01no377_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:41 2005
         (461 letters)



>mm_chr5_43437219_43438079
          Length = 861

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcccagcagaaacgggctttcaaatatttcttttacaagttcacacacagaaacttgaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcccagcagaaacgggctttcaaatatttcttttacaagttcacacacagaaacttgaaa 263

                                                                       
Query: 64  gtggatgcttagtcaccaaaatacaagaccttgttaaacacagagacatctctaaaaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggatgcttagtcaccaaaatacaagaccttgttaaacacagagacatctctaaaaaga 323

                                                                       
Query: 124 atgccaagaactggtaaatgaatggatagagcttggaagcattactggagtccttctctg 183
           |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 324 atgccaagaactggtaaatgaatggatagagcttcgaagcattattggagcccttctctg 383

                                                                       
Query: 184 cccagttacacccctggcttaggaaatcccagtatcacaacattatgaattcagtttccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccagttacacccctggcttaggaaatcccagtatcacaacattatgaattcagtttccc 443

                                                                       
Query: 244 tgcaggcatgctctgtgatgggacatagactctaagactaggtatgcagtcccaacacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcaggcatgctctgtgatgggacatagactctaagactaggtatgcagtcccaacacct 503

                                                                       
Query: 304 gaatctgatgcttaagacagatgcttcagtaaactcctaatcaaagccaaagtgatgatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaatctgatgcttaagacagatgcttcagtaaactcctaatcaaagccaaagtgatgatc 563

                                                                       
Query: 364 agagacaggaggaattcagtaggcctggaacttgttctgcatctacttccctgtgtctgg 423
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 agagacaggaggaattcggtaggcctggaacttgtcctgcatctacttccctgtgtctgg 623

                                                 
Query: 424 aactggcatctccctttagtccctcagcagttctgcaa 461
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aactggcatctccctttagtccctcagcagttctgcaa 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_h19.g1 MSMg01no377_h19.g1 CHROMAT_FILE:
MSMg01no377_h19.g1 PHD_FILE: MSMg01no377_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:41 2005
         (444 letters)



>mm_chr5_43654774_43655617
          Length = 844

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagtcctcacagcagtcccccgaggcaagcagtgtgctctggcttagatattaagga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 actcagtcctcacaacagtcccccgaggcaagcagtgtgctctggcttagatattaagga 585

                                                                       
Query: 61  atgaaagtcaaggtcaggtcaagtacgctgctccaggttgtacagaaaggtgagctggtg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgaaagtcaaggtcaagtcaagtacgctgctccaggttgtacagaaaggtgagctggtg 525

                                                                       
Query: 121 tcaaagtcttatgctatccacacacctccaaacatggtgaagcaaaatgtatcactaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaaagtcttatgctatccacacacctccaaacatggtgaagcaaaatgtatcactaaat 465

                                                                       
Query: 181 acttatctttaaagtgaatagggttagctatgcttactataataagaagcaatggctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acttatctttaaagtgaatagggttagctatgcttactataataagaagcaatggctaag 405

                                                                       
Query: 241 caacttaaacacctgctctatagtgaattaaatctagacaataaaatgctatactttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caacttaaacacctgctctatagtgaattaaatctagacaataaaatgctatactttctt 345

                                                                       
Query: 301 caccaatcagtagtatttagtaactatttaatacagaaggagccttgtgccaacatcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caccaatcagtagtatttagtaactatttaatacagaaggagccttgtgccaacatcatt 285

                                                                       
Query: 361 taatcccctggtttcctgagaatataacatgctaagaatatagctaaactgcatttgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taatcccctggtttcctgagaatataacatgctaagaatatagctaaactgcatttgtta 225

                                   
Query: 421 aagaaaaagtttcccttacctccg 444
           ||||||||||||||||||||||||
Sbjct: 224 aagaaaaagtttcccttacctccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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