BAC Information

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BAC

Clone NameMSMg01-377N08
Chromosome5 (Build37)
Map Location 19,420,127 - 19,420,515
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377N08.T7 (MSMg01no377_n08.b1)MSMg01-377N08.TJ (MSMg01no377_n08.g1)
ACCAG482822AG482823
length770766
length of high quality
(start - end)
431 (49 - 479)389 (78 - 466)
definitionCHROMAT_FILE: MSMg01no377_n08.b1 PHD_FILE: MSMg01no377_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:09 2005CHROMAT_FILE: MSMg01no377_n08.g1 PHD_FILE: MSMg01no377_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTATTACCTTGAGAAAAGAAATTGAAGATGACTCAAGGAT
TAGACAAATCTTCTATATGCTCACTGATTGGCAGATGGAGATGAGAGAGA
AGCCCACATTATCAAAAGTAATCTAGAAATTAAATGCAATCTCTACCAAA
ATGCTAGTAAATCCTGTACATAAGTGAAACAAATAATCTTAGAATCATGG
GGAACTACACATTCCATGGGGGCCAGAGCAATCCAGAGTAAAAAGAAATC
TGGGGAAATATCAGTGTTTCATCTAAAAACATACTAAAGACATAGGGATG
GAAATAGCAGTGGACTTGTACCATGCCAACATGACACATAGATCAACGAA
ATAGAATGAGATGAGTTAGAACAGAACCTGGAATTAAGTCACACAGCATC
AGTCCTCTGGTTTAAAAAGAATTACCCAAGATTTTAAATCATTTTCATAC
ATGTATACAATGTACTTTGAGCATAATCCCATACATACATTGAACAGAGA
GACTTTCTAAAACTGGTGCATAAAGCATAAAAAAAAATCAGGGGTAAGGA
GGAATATAAGAAGGGGGGAGTGAACATAAAGAAAATCTACGGTTTTCCCT
ACTCTTCCCCCTTTTTCCCTTTTTTTCCCATATATCCCTCCCTATATTCT
TTCCCTTCTTTTTCCCCATTATCCCCCTTTATTCATCCTTCCTTCCCCCT
CTATAACATTTCCCCTCACC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCATTTCATTCGAGCAGTAA
CCTTGGGCTCTAACCTTGGGCACAGTTGGCACTCACACTCCTGGACACTG
TGGTTTGCTTCCCACCTTGCCTTGAAGTGCCCAGTTTCAACATTTAGGAC
TAATCTCAAAGAACTTTTTTGTCAGAGGTGCGTTTAATGATTCTTTTAGC
AATATCGATCACTTTAATTGAGGCTTATTGTAAGTACTCAGTATGGCTCT
CTTGTGGTTTATACTCTATAAATATATCATCATCATATTGATAGTCAGGT
TTTCATTTCATTGCATTCTTCCTAACACCCCATGGAAACCTAAACTTCCC
ACCAGAGCATGGGAGAAGGGAGTTGTCTCCTCTGTTTTCTAGCTATTCTT
AAACTATGACTTTAAGAATCATTTAGAAATATATCCTTAATATTTCTGAA
CTCCTAAAGCCAAATTTTGGATCTTACTGGTGTGTGCGGTGGGTGTATAA
ACCCCCCTAAAACGGAACCCCTTTTTAAAACTTGGGTATTTGACCTTCTA
TAGGTGTTTTTTAAAGGAACCTTTAATATCGGAAAACTTTTTACCCCCCT
TTTATTTCAAGCAAACCCAACTTTATATACCGTGGGTTGGTGCAATAATT
ATATATTTTTTCGGATCCTCCCATTCAAAAATTTTTTTTCCATTTTCTTA
TACCCCTTCATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_n08.g1 MSMg01no377_n08.g1 CHROMAT_FILE:
MSMg01no377_n08.g1 PHD_FILE: MSMg01no377_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:09 2005
         (389 letters)



>mm_chr5_19419927_19420715
          Length = 789

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcatttcattcgagcagtaaccttgggctctaaccttgggcacagttggcactcaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaatcatttcattcgagcagtaaccttgggctctaaccttgggtacagttggcactcaca 260

                                                                       
Query: 61  ctcctggacactgtggtttgcttcccaccttgccttgaagtgcccagtttcaacatttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggacactgtggtttgcttcccaccttgccttgaagtgcccagtttcaacatttag 320

                                                                       
Query: 121 gactaatctcaaagaacttttttgtcagaggtgcgtttaatgattcttttagcaatatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactaatctcaaagaacttttttgtcagaggtgcgtttaatgattcttttagcaatatcg 380

                                                                       
Query: 181 atcactttaattgaggcttattgtaagtactcagtatggctctcttgtggtttatactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcactttaattgaggcttattgtaagtactcagtatggctctcttgtggtttatactct 440

                                                                       
Query: 241 ataaatatatcatcatcatattgatagtcaggttttcatttcattgcattcttcctaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaatatatcatcatcatattgatagtcaggttttcatttcattgcattcttcctaaca 500

                                                                       
Query: 301 ccccatggaaacctaaacttcccaccagagcatgggagaagggagttgtctcctctgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccatggaaacctaaacttcccaccagagcatgggagaagggagttgtctcctctgttt 560

                                        
Query: 361 tctagctattcttaaactatgactttaag 389
           |||||||||||||||||||||||||||||
Sbjct: 561 tctagctattcttaaactatgactttaag 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)