BAC Information

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BAC

Clone NameMSMg01-377O03
Chromosome5 (Build37)
Map Location 20,920,607 - 20,921,087
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2
Downstream geneAI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377O03.T7 (MSMg01no377_o03.b1)MSMg01-377O03.TJ (MSMg01no377_o03.g1)
ACCAG482860AG482861
length753772
length of high quality
(start - end)
517 (48 - 564)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no377_o03.b1 PHD_FILE: MSMg01no377_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:13 2005CHROMAT_FILE: MSMg01no377_o03.g1 PHD_FILE: MSMg01no377_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGGCTTTCAGTTTCCCTACCAAACTCAATACCTGTCTCTCA
CCACTCTATGACCTCTCCAGCCTCTGCACCTAGAGAATTCTCTTTGCTTG
TCATCTGAAGGGATAAAAGTCGTGATGTCTTATTGCTGTTCCCAAATTCC
CTCGTCAGTGCATTGATATTCTTAAATGCCTGAGCTCTAAACTGTTTCCT
TCTTTAAGGTAAGGTTCTGGGTTCATATGGTACTCTGAGGGGCCTGTGTG
AAACTTTTCTCTCATCACCAACTCAGAAATTTATTTTTATTTAAATATTT
TTATTTATTATAATTCATCCAAATATTTATTCATTTAAATTTATTTTATT
TAGATTTGTGTTATTTAAATATTTATTTTGTTTAGGTTTGTGTAGGACTT
TTAATTTAAATTTATTTTATTTAAATATTCATTTTTATTTAAATTTATTT
ATTTTATTTTATTTTTCTTGCTTCTTCCAATGCAAAGGTAGGAAAATTGG
GTTGGTAAACTATTCTTCTAACCTGGCAATTGATAAGCCTTTGTCCTCTA
CAGGAAATAGATTGGGTAAATGACTCTATGTGGAGGAAGACTCCACATGT
GGGATGAAAGTTCCTTTTGTGCCGGCGCGATTCAGCTTTACCTACCTCAT
TTCAAAGGGAGATGGGTAACCAATTTTTATTGGCCGTGCGTCCTCTGCCT
TTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAGCTACATTCAATGACTC
AGGAGGATCCCTGACATTAACTCTGACCTACAGTGTCATGCTCCTATGTG
CGACCATGCATGCACACACATCTCTCAGCCTTTGAAGGAGAAGCTGAGAT
TCTACTTAATTTATAGTGTAGACATTACTAAACATGCTTCTGCAAATTAT
ATTTTGAAGTCCCAGCTTTTAAGACATAAATAGGAGTAACGCTACCATGT
CCGCTTTCTACATACTTTAAATCCGAGGTCTTATTATTCTCCCAAGTTAC
ATCCATTTACTGATTTTTGTGCATATATGTGAATGAGTGAAAGTGATTGT
ATATGTGTATAGGAATGTGTGNGNNNNNNNNNTNNNNNNNNTNNNNNNNN
NNTTTTTTNTTTTTTTTCTTTTTTTTTTNTTNTTTTTTTTTTTTTTNNTT
TTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTCCTTTTTTTTTTTTTTNN
TTTTTCTTTTTNNTNNTTTTTTTTTTTTTTNTNTTTTTTCCCTTNTTTTT
TCTCTCCCCCTTCCCTCCCCCTTCTCTTCCTTCTCTTTTCCCTCTTCTTT
TCTTCCCCTTTTCCTTTTTTCTTTTTTCCCCCCTTTCTCCTCCCCTCTCT
CTCCTTCTTTCTCCCCCCTTTTTTTTTTCCTTCTTTCNTTTTTTTCCCTC
TCCCTTCCCCCCTTCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_o03.b1 MSMg01no377_o03.b1 CHROMAT_FILE:
MSMg01no377_o03.b1 PHD_FILE: MSMg01no377_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:13 2005
         (517 letters)



>mm_chr5_20920607_20921523
          Length = 917

 Score =  690 bits (357), Expect = 0.0
 Identities = 455/515 (88%), Gaps = 52/515 (10%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaggctttcagtttccctaccaaactcaatacctgtctctcaccactctatga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaattcttaggcttttagtttccctaccaaactcaatacctgtctctcaccactctatga 422

                                                                       
Query: 65  cctctccagcctctgcacctagagaattctctttgcttgtcatctgaagggataaaagtc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctctccggcctctgcacctagagaattctctttgcttgtcatctgaagggataaaagtc 362

                                                                       
Query: 125 gtgatgtcttattgctgttcccaaattccctcgtcagtgcattgatattcttaaatgcct 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 gtgatgtcttattgctgttcccaaattccctcatcagtgcattgatattcttaaatgcct 302

                                                                       
Query: 185 gagctctaaactgtttccttctttaaggtaaggttctgggttcatatggtactctgaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagctctaaactgtttccttctttaaggtaaggttctgggttcatatggtactctgaggg 242

                                                                       
Query: 245 gcctgtgtgaaacttttctctcatcaccaactcagaaatttatttttatttaaatatttt 304
           | |||||||||||||||||||||||||||||||||||||||||||||||    |||    
Sbjct: 241 ggctgtgtgaaacttttctctcatcaccaactcagaaatttatttttat----ata---- 190

                                                                       
Query: 305 tatttattataattcatccaaatatttattcatttaaatttattttattt---------- 354
            ||     ||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 189 -at-----ataattcatccaaatatttattcatttaaatttattttatttgcgtatttat 136

                                                                       
Query: 355 -------agatttgtgttatttaaatatttattttgtttaggtttgtgt-aggactttta 406
                  |||||||||||||||||||||||||||||||||||||||||| || ||||   
Sbjct: 135 tttatttagatttgtgttatttaaatatttattttgtttaggtttgtgttag-actt--- 80

                                                                       
Query: 407 atttaaatttattttatttaaatattcatttttatttaaatttatttattttattttatt 466
           |||||   |||||||||||| |    |        ||||  ||| ||| |||||||||||
Sbjct: 79  atttac--ttattttatttaga----c--------ttaa--ttacttactttattttatt 36

                                              
Query: 467 tttcttgcttcttccaatgcaaaggtaggaaaatt 501
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tttcttgcttcttccaatgcaaaggtaggaaaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)