Query= MSMg01no377_o18.b1 MSMg01no377_o18.b1 CHROMAT_FILE:
MSMg01no377_o18.b1 PHD_FILE: MSMg01no377_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:16 2005
(419 letters)
>mm_chr5_117368989_117369804
Length = 816
Score = 687 bits (355), Expect = 0.0
Identities = 399/415 (96%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgtgtctgccaagagggcttagagaggctgtcacactgtggaggggaactga 64
|||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 gaattcagtgtgtcaggtaagagggcttggagaggctgtcacactgtggaggggaactga 383
Query: 65 atggctaaggagtgcgaacttccaggacagtgtaagacatggtgaaagataaaccccctt 124
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 382 atggctaaggagtgcgaacttccgggacagtgtaagacatagtgaaagataaaccccctt 323
Query: 125 tgggggacaattatatttgtgaaacagcccataatctgtgtggctctatttctcccttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 322 tgggggacaattatatttgtgaaacagcccataatctgtgtggctctatttcttccttca 263
Query: 185 gaattgttgggtccccctccacagctctcaggcatggagttgttgttgtttaccaggctt 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 262 gaattgttgggtccccctccacagctctcaggcatgga---gttgttgtttaccaggctt 206
Query: 245 taaaaatggtggcacacgcctttaatcccatcacttgggagacagaggcaggtggatttc 304
| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 tgaaaatggtggcacacgcttttaatcccagcacttgggagacagaggcaggtggatttc 146
Query: 305 tgagttcgaggccagtctggtctacagagtgcgttccaggacagccagatttatacagag 364
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 145 tgagttcgaggccagcctggtctacagagtgcgttccaggacagtcagatttatacagag 86
Query: 365 aaaccctgtctcgaaaagacaaaaccaaaaccaaaaatccttttttgttgtttgt 419
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 85 aaaccctgtctcgaaaagacaaaaccaaaaccaaaaatcctttttt-ttgtttgt 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 816
Length adjustment: 9
Effective length of query: 410
Effective length of database: 807
Effective search space: 330870
Effective search space used: 330870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_o18.g1 MSMg01no377_o18.g1 CHROMAT_FILE:
MSMg01no377_o18.g1 PHD_FILE: MSMg01no377_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:16 2005
(402 letters)
>mm_chr5_117204410_117205211
Length = 802
Score = 739 bits (382), Expect = 0.0
Identities = 397/402 (98%)
Strand = Plus / Plus
Query: 1 gagatcgaggcagccctggggattgtttagacaaataccaggggccagggacttggttct 60
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatcgaggcagccccgggggttgtttagacaaataccaggggccagggacttggttct 260
Query: 61 ctacaaggaggagagctgcatacaaagtcttacacaaagcagggtttccaaagagaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacaaggaggagagctgcatacaaagtcttacacaaagcagggtttccaaagagaaatg 320
Query: 121 gatttttttttctcagcagcccaaatgagctctcaacaaatgtaccatctgcttggaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gatttttttttctcagcagcccaaatgagctctcaacaaatgtaccatctgcttggattc 380
Query: 181 catgcaggctctcccagaacagaccattagctctagtgaaaaagcaagctcctgtggtga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcaggctctcccagaacagaccattagctctagtgaaaaagcaagctcctgtggtgt 440
Query: 241 agttgggaagagactcccagaagcctggtgagagtgtaggccccataagaaagggagatg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaggaagagactcccagaagcctggtgagagtgtaggccccataagaaagggagatg 500
Query: 301 gagaaagtcagagaaagggaccccatgagtcagttgctgctgtgcacagatacacaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaagtcagagaaagggaccccatgagtcagttgctgctgtgcacagatacacaaaat 560
Query: 361 cctactgagaaccagtggagatgagacggaacatctcagaat 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctactgagaaccagtggagatgagacggaacatctcagaat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
