Query= MSMg01no378_b03.b1 MSMg01no378_b03.b1 CHROMAT_FILE:
MSMg01no378_b03.b1 PHD_FILE: MSMg01no378_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:28 2005
(579 letters)
>mm_chr5_87015896_87016872
Length = 977
Score = 1087 bits (562), Expect = 0.0
Identities = 569/572 (99%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 8 gaattcttgattcagttaagaacttcttttttatgttactgtgatgtaggatgatggtta 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttgattcagttaagaacttcttttttatgttactgtgatgtaggatgatggtta 267
Query: 68 agtttgaactgagatgtgcaaatacctagctgaatttgttcatgttaataagagctgact 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agtttgaactgagatgtgcaaatacctagctgaatttgttcatgttaataagagctgact 327
Query: 128 tctccatgttcctgaatgataagttgcaactctgtgtaaatcatccaaatttctaactag 187
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 tctccatgttcctgaatgataagttgcaactctgt--aaatcatccaaatttctaactag 385
Query: 188 tagctctgtgaaaggcaagagaaacaaattccccacctcaaaaagaccttgcctcagcat 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagctctgtgaaaggcaagagaaacaaattccccacctcaaaaagaccttgcctcagcat 445
Query: 248 ccattattttgtaagcacattagagagcagtggataagccattttatatacaatgtcaca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccattattttgtaagcacattagagagcagtggataagccattttatatacaatgtcaca 505
Query: 308 tgcaacttaatcatcttttaatagcttctatcaacaagaaaaaagggatggaggcaaatg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgcaacttaatcatcttttaatagcttctatcaacaagaaaaaagggatggaggcaaatg 565
Query: 368 ggttaaaataaggtccaattaatggcttgctgatttttgaaagagtaggaaatactgagt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggttaaaataaggtccaattaatggcttgctgatttttgaaagagtaggaaatactgagt 625
Query: 428 ggcatcttgctgctatgatagggccaaggagtgagaaatactagcagtttccagcaaatg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggcatcttgctgctatgatagggccaaggagtgagaaatactagcagtttccagcaaatg 685
Query: 488 tatgttgtctccaaaacaatgactgatggaaggcaagaaattagctctgtgccctatccc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tatgttgtctccaaaacaatgactgatggaaggcaagaaattagctctgtgccctatccc 745
Query: 548 agagcacacttttcctgagtttacaggaaata 579
||||||||| ||||||||||||||||||||||
Sbjct: 746 agagcacacctttcctgagtttacaggaaata 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_b03.g1 MSMg01no378_b03.g1 CHROMAT_FILE:
MSMg01no378_b03.g1 PHD_FILE: MSMg01no378_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:28 2005
(525 letters)
>mm_chr5_87192196_87193120
Length = 925
Score = 748 bits (387), Expect = 0.0
Identities = 413/431 (95%), Gaps = 17/431 (3%)
Strand = Plus / Minus
Query: 1 atgagtcatatgattctttaaaaatgtaatattgatatgtaatagtttctgtatcaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgagtcatatgattctttaaaaatgtaatattgatatgtaatagtttctgtatcaatct 356
Query: 61 ggccacgataaagtgcatgtataaaataatatgtgcacataaattttaattaaagcacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggccacgataaagtgcatgtataaaataatatgtgcacataaattttaattaaagcacta 296
Query: 121 taaccagctttaacatctctaataagatcagaacaatttaagtctcaacagtttgaaaag 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 taaccagctttaacatctctaataagatcaggacaatttaagtctcaacagtttgaaaag 236
Query: 181 gcattgcggttaatgagccaatgagaagatattgggccgggc-gtggtggctcatgcctt 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 235 gcattgcggttaatgagccaatgagaagatattgggccgggcggtggtggctcatgcctt 176
Query: 240 taatcccagcacttgagaggcagagacaggcagatttctgagttcgaggctagcctggtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 taatcccagcacttgagaggcagagacaggcagatttctgagttcgaggctagcctggtc 116
Query: 300 tacaaagtgagttccaggacagtcaggactgtacagagaaaccctgtctagaaaaaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tacaaagtgagttccaggacagtcaggactgtacagagaaaccctgtctagaaa------ 62
Query: 360 aacaaacaaaaaaagatatcaggatccccatcattgtagtgagacagtcaaagaagtcag 419
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 -------aaaaaaa---atcaggatccccatcattgtagtgagacagtcaaagaagtcag 12
Query: 420 gaaagctaact 430
|||||||||||
Sbjct: 11 gaaagctaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
