Query= MSMg01no378_i24.b1 MSMg01no378_i24.b1 CHROMAT_FILE:
MSMg01no378_i24.b1 PHD_FILE: MSMg01no378_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:05 2005
(610 letters)
>mm_chr5_8421457_8422466
Length = 1010
Score = 1120 bits (579), Expect = 0.0
Identities = 600/607 (98%)
Strand = Plus / Plus
Query: 4 ggaattctatagagctgccctggaaaacttaccttctcatggtgtaaacttcatgtgggt 63
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattctatagagctgttctggaaaacttaccttctcatggtgtaaacgtcatgtgggt 263
Query: 64 aattaacaggtcggtgaaaacccaacacaggtgtttcaaatatttaaagcttatttacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattaacaggtcggtgaaaacccaacacaggtgtttcaaatatttaaagcttatttacct 323
Query: 124 aggtagccacacacactcatctagaataaacaacctaattcttaggggttactaaatgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtagccacacacactcatctagaataaacaacctaattcttaggggttactaaatgct 383
Query: 184 ggcattttggtttcatagtttgtctagtacttaaaagaactagacgagggagttcatgca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcattttggtttcatagtttgtctagtacttaaaagaactagacgagggagttcatgca 443
Query: 244 ctttgtttacatattaagaacctaagcccactaaggactatgccattcatcttttatttt 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ctttgtttacatattaagaacctaagcccactaaggactatgccatccatcttttatttt 503
Query: 304 aaaagcagatgagaatcaaacatcttctttaaactttcgaacacaacctgcactttagta 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 aaaagcagatgagaatcaaacatcttctttaaactttcgaagacaacctgcactttagta 563
Query: 364 cttagttactagacacacatgcacctcttaggaattttccctacaatgaaaattttttat 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 cttagttactagacacacatgcacctcttaggaattttccctataatgaaaattttttat 623
Query: 424 attaaacattgagattgaaatctgcttttgtctatgaggttgaaacacacacacatacac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attaaacattgagattgaaatctgcttttgtctatgaggttgaaacacacacacatacac 683
Query: 484 ctctccgtctccctcacgagtgacgggaacagtcacaaatgggcgtgggcgcctcctccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctctccgtctccctcacgagtgacgggaacagtcacaaatgggcgtgggcgcctcctccg 743
Query: 544 tggggccgtcggggacccgcgcattgtctgaagcctgcaggcccgggaatgccgggtcgc 603
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 744 tggggccgtcggggacccgcgcattgtctgaagcctgcagccccgggaatgccgggtcgc 803
Query: 604 tcgcggc 610
|||||||
Sbjct: 804 tcgcggc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_i24.g1 MSMg01no378_i24.g1 CHROMAT_FILE:
MSMg01no378_i24.g1 PHD_FILE: MSMg01no378_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:05 2005
(573 letters)
>mm_chr5_8594329_8595301
Length = 973
Score = 919 bits (475), Expect = 0.0
Identities = 498/506 (98%)
Strand = Plus / Minus
Query: 68 taatcgaatttgttattgtcttttctgagaaatactgtaatgaaactatacagtctagtt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 taatcgaatttgttattgtcttttctgagaaatactgtaatgaaactatacagtctagtt 914
Query: 128 catttatcaatataaattttaatagaataaggaaggaagctaattgaacttgaggtatta 187
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 913 catttatcaatataaattttaatagaataaggaaagaagctaattgaacttgaggtaata 854
Query: 188 gttcagtggtagagtgctttctgagcaggagcatggtcctaggatcactctctagtgcca 247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gttcagtggtagtgtgctttctgagcaggagcatggtcctaggatcactctctagtgcca 794
Query: 248 taaaacagcaagaacaaaaattccatggacatattaaggtatttcaggtttaagtcaaat 307
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 793 taaaacagcaagaacaaaaattccatggacatagtaaggtatttcaggtttaagtcaaat 734
Query: 308 gaggttaataattcaaagcatgtttttaaaacagttactataaatcaactatgtggttgt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaggttaataattcaaagcatgtttttaaaacagttactataaatcaactatgtggttgt 674
Query: 368 taatagacatgggtccggaaatgatttttgggaagaaatatttaaatgtttcaggtgcct 427
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taatagacatgggtcctgaaatgatttttgggaagaaatatttaaatgtttcaggtgcct 614
Query: 428 agaaacttcatatattcctattcttaataatgtaatgtagtaaatttattttacacatgg 487
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 613 agaaacttcatatattcctatttttaataatgtaatgtagtaaatttattttacacatgg 554
Query: 488 gaggttatatattttattatacatcgtanatatttacttaaaatttactgctatttttaa 547
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 553 gaggttatatattttattatacatcgtaaatatttacttaaaatttactgctatttttaa 494
Query: 548 attaaaacacccaatatcaatataag 573
||||||||||||||| ||||||||||
Sbjct: 493 attaaaacacccaatgtcaatataag 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
