NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAAAATGTTTCTTACGGGGAAACTCATTAGAACCATCAA
GACTGGTAAGGTTTGGTGTTATGGGGCAGGGTTCTCTGATCAAAAGAGCC
ACCATCTTCATTGGGTCAGCTGTTCCTGCTTGCAAGAAGCCATCCAGATC
TCACCCGATGGCTGTTGATAGTCTGTAGAACAGTGGTTCTCAACCTTTCG
GTTGTGATCCCTTGTGTGTGGGGGGGCATCAAATGACCTTTTCATAGGGG
TCACCTAAGACCATTGGAAAACATTTATATTAAGATTAATGAGTTGCAAA
TATATATACCTTCACTCACACACATGAAGTTATGCACACCCTGACCCTTC
AGAGAGACAGAGAGATATTTTGGAGTGTTTTGCCACATGCATGTCTATCC
CGCACTTCCATACCTGGTACCTACAGAGGTCAGAAGAAGGTATCAGATCC
CCTAAAACTACAGTTATGAAGTAGCAATGAAAATAAATATGCTTGGGGGT
CATCACAACATGAGGAACTGCATTAATGGGTTGCAGCATTAGGAAGGTTG
AGAAGGGTGGCTATAAAGGCTATAGCTATACCTTCTATAGGTATACACGG
CTGTTCTCTTCTATACCCAAGGCTATTGAAAAAGGGTGTGGGCTGGGTCA
TTGGACCGTCACCTCAGATTCTAAGGGCATCCGCCAGCCATTTGTAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGCCTTTTATCCAGACAG
TCTGGCAGAACTGGCAAGGTCTAGGTCCAGTGAGAGACCCTATCTAAAAA
ATTCAAGTGCGAGAGTTTTTCGGTTGCTTTCCCCAGGTGGTGTCTGCAGC
AGGAGGGTCTTACTATCTGGATGTGATGGGTGATTACGTGCAGCGGCTGT
AGTCCATATGACTTGAGGAGTCTCTGGGATTCCCTAGCTACGTCATAGCA
GCTGCGGTTGCCTACACAAGACCTAAACATGACCAAGTCAGTCAACATTC
TAGTGGGAGCAGGGGAGGCACTCATGAGCTCTCACCTCTAACTAAGAAGC
TTCATACAGGTAAAGGCTGAAGGGAGAGTCAGGGGTTTTATTTTTCAGCA
ATGTGACCCATGGTAGCTTGTTCCTGCTCCCACTAGATGGCCCTGGACCG
GTGAGCACACAGAGGACACTAATTGTACACAGTGTGTTGAGGAGGAAGAG
AAGGAGGAACAAGAGGAGGAGGGGGAGGAGGAAGAAGAGGCTGTGTCATT
TTTAGAGAATGATGAGAAAGAGAATAATATTAAGGAGGTGGAGCAAAAAG
ATAAATAAGAATTAATGTTGCTATAGATATGTGGAAAGAGCCGCGTCCTA
GCCTTTGTATTTCCTCCTTATTTCTTCTTCCCTCATTTATTCCCCTACA

Query= MSMg01no378_j01.b1 MSMg01no378_j01.b1 CHROMAT_FILE:
MSMg01no378_j01.b1 PHD_FILE: MSMg01no378_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:05 2005
         (639 letters)



>mm_chr5_134473741_134474779
          Length = 1039

 Score =  669 bits (346), Expect = 0.0
 Identities = 372/384 (96%), Gaps = 7/384 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaaaatgtttcttacggggaaactcattagaaccatcaagactggtaaggtt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctctaaaatgattcttacggggaaactcattagaaccatcaagactggtaaggtt 322

                                                                       
Query: 65  tggtgttatggggcagggttctctgatcaaaagagccaccatcttcattgggtcagctgt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tggtgttatggagcagggttctctgatcaaaagagccaccatcttcactgggtcagctgt 262

                                                                       
Query: 125 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcttgcaagaagccatccagatctcacccgatggctgttgatagtctgtagaacag 202

                                                                       
Query: 185 tggttctcaacctttcggttgtgatcccttgtgtgtgggggggcatcaaatgaccttttc 244
           |||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||
Sbjct: 201 tggttctcaacctttcggttgtgatcccttg---gggggggggcatcaaatgaccttttc 145

                                                                       
Query: 245 ataggggtcacctaagaccattggaaaac----atttatattaagattaatgagttgcaa 300
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 144 ataggggtcacctaagaccattggaaaacacatatttatattaagattaatgagttgcaa 85

                                                                       
Query: 301 atatatataccttcactcacacacatgaagttatgcacaccctgacccttcagagagaca 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 84  atatatataccttcactcacacacatgaagttgtgcacaccctgacccttcagagagaca 25

                                   
Query: 361 gagagatattttggagtgttttgc 384
           ||||||||||||||||||||||||
Sbjct: 24  gagagatattttggagtgttttgc 1



 Score =  136 bits (70), Expect = 7e-36
 Identities = 82/86 (95%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 374 gagtg-ttttgccacatgcatgtctatcccgcacttccatacctggtacctacagaggtc 432
           ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 788 gagtgtttttgccacatgaatgtctatcccacacttccatacctggtacctacagaggtc 847

                                     
Query: 433 agaagaaggtatcagatcccctaaaa 458
           |||||||||| |||||||||||||||
Sbjct: 848 agaagaaggtttcagatcccctaaaa 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)