BAC Information

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BAC

Clone NameMSMg01-378K23
Chromosome5 (Build37)
Map Location 128,730,618 - 128,731,006
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378K23.T7 (MSMg01no378_k23.b1)MSMg01-378K23.TJ (MSMg01no378_k23.g1)
ACCAG483474AG483475
length778801
length of high quality
(start - end)		506 (50 - 555)340 (78 - 417)
definitionCHROMAT_FILE: MSMg01no378_k23.b1 PHD_FILE: MSMg01no378_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:14 2005CHROMAT_FILE: MSMg01no378_k23.g1 PHD_FILE: MSMg01no378_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTGTTGTGTTGCCTTAGTGAGCATTGCTTGTAGCTGTCAT
TGTTGAAGTGGTTGTACCAATGTCTGAGGATTTTGTGACTTTTAAAATAT
ATTTATTTTTCTTTTCTTTCATGTGTATAAGTGTTTGTCCATCTGTACGT
CTATGTAGCATGTGTACAGTGCCTACCAAGTCCTTGACATGGTGTCAGAT
ACCCTGGAACTTGAGTTACAGGTGGTTCTGAGCCACCATGTTGGTTCTGA
GAATTGAACCGGGGTCCTCCGGAAGAGCATTAAGTACTCTCAACTGCTGA
GCTGTCTCTTTAGCTCTCTGATGATTTTATTTTCTCACGGGCCAGGATGA
AGGGTTCTTATACTTTCGGAGCCAGGCTGCTCTCCAGGATATACTTTATA
TTCTTTTGATGAAAATTACCGTACCCTAAGAAGAAAAGCATCTCTTAGAG
GTGTTCATTCTCCCTCATTAGCATGTCTCCTAATGGTCCTGTCAATCTGG
TTGTGAGATAGTGCTGCTTCCTGCCAGGCANGTGACATTCATTCTCCCTG
AAGCTGGGATTCTTTTGCTTTTCCAAAGCCCAAGGCCTGACAGCGCTTCA
GCTGTGGTGAAAAACACGCAGGGTATCATCCCCAAAAAATGTTGTTACAA
AACCCATTTTTATTTACCCCGCAAGAGCCTGAAAGGGCTTTTGAGGACAC
CTAATCTTCTTGCTTCCATTTAAAACGA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCATGATTGATGAATGAGTG
TCATGTATTGTGGTGGTTTGAATAGGTTTGGCTTCCATAGACTCATGTCT
TGGAATGCTTGGCCCATGAGTGGCACTGTTAGGAGGTGTGGCATTTTGGA
GTGGGTGTGGCCTTGTTAGAGGAAGTGTGTCATGGTGGGGCGGGGCTTTG
AGATCTACAGCTCTACCCGGTGTGTATTCCAGTCTCCTCCTTGCTGCCTG
GGGATCAACATGTAGGACTCATAACTTCTCCAAAACCATATCTGCTTGTT
CGATACCATGCTCCCCGCCATGATGATAATGGACTAGACTTCTGTAGTGG
TTTGAATACGCTTAGCCCACGGAGCACAACTATTAGGAGGTGTGACCGTG
TTGCAGTAAGTGTGTCCCTGTTGGACGAAATGCGTCACCGTGCGAGAAAG
AAAATGAAATCCTCTTCTTAACTATATACGAAACAGTTCTTTTTCCTTCT
TTTTTCCCCCACCCCCATTGTTCCTGGTCCTGCCATCCTGCTCCTTTTTC
CCCACCACTCTATTTTTATAAACTCTTTTTACTTCTCTACTCTCTCCCAT
CTTTATTCACCACCCCATATTAACACCCCTTAAATCTTTCTCCTCCTCCC
TCTCCTTCATCCCCTTCCTATTTCTTACCTTACTGCCCATATTTCTCTTG
TCCCCCATTTTACCCTCCCCTTACCCCTTCCCATCATTTCCACCATATTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_k23.b1 MSMg01no378_k23.b1 CHROMAT_FILE:
MSMg01no378_k23.b1 PHD_FILE: MSMg01no378_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:14 2005
         (506 letters)



>mm_chr5_128730101_128731006
          Length = 906

 Score =  714 bits (369), Expect = 0.0
 Identities = 384/389 (98%)
 Strand = Plus / Minus

                                                                       
Query: 118 tttcatgtgtataagtgtttgtccatctgtacgtctatgtagcatgtgtacagtgcctac 177
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 906 tttcatgtgtataagtgtttgtccatctgtacgtctatggagcgtgtgtacagtgcctac 847

                                                                       
Query: 178 caagtccttgacatggtgtcagataccctggaacttgagttacaggtggttctgagccac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caagtccttgacatggtgtcagataccctggaacttgagttacaggtggttctgagccac 787

                                                                       
Query: 238 catgttggttctgagaattgaaccggggtcctccggaagagcattaagtactctcaactg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 catgttggttctgagaattgaaccggggtcctccggaagagcattaagtactctcaactg 727

                                                                       
Query: 298 ctgagctgtctctttagctctctgatgattttattttctcacgggccaggatgaagggtt 357
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 726 ctgagctgtctctttagctctctgatgattttattttctcactggccaggatgaagggtt 667

                                                                       
Query: 358 cttatactttcggagccaggctgctctccaggatatactttatattcttttgatgaaaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttatactttcggagccaggctgctctccaggatatactttatattcttttgatgaaaat 607

                                                                       
Query: 418 taccgtaccctaagaagaaaagcatctcttagaggtgttcattctccctcattagcatgt 477
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taccataccctaaaaagaaaagcatctcttagaggtgttcattctccctcattagcatgt 547

                                        
Query: 478 ctcctaatggtcctgtcaatctggttgtg 506
           |||||||||||||||||||||||||||||
Sbjct: 546 ctcctaatggtcctgtcaatctggttgtg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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