BAC Information

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BAC

Clone NameMSMg01-378P17
Chromosome5 (Build37)
Map Location 36,829,176 - 36,829,680
singlet/doubletsinglet
Overlap geneCcdc96
Upstream geneCpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1
Downstream geneTbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378P17.T7 (MSMg01no378_p17.b1)MSMg01-378P17.TJ (MSMg01no378_p17.g1)
ACCAG483702AG483703
length741750
length of high quality
(start - end)
546 (48 - 593)305 (328 - 632)
definitionCHROMAT_FILE: MSMg01no378_p17.b1 PHD_FILE: MSMg01no378_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:36 2005CHROMAT_FILE: MSMg01no378_p17.g1 PHD_FILE: MSMg01no378_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGAT
CCGCGGAATTCAAACCCTTGGCATCCACATAAAACAGCCAGACGTGGCCT
TGCATGCCTGAAACCTGGTGTTGGGGAACAGAGACAAGCAGATCCCAGGA
TCATCATGCTAGCTGGACTAGCCCAAACGGCAAAGTTCCAATTGAGTAAG
AGACCCTGTCTGAAAAAAATCAAGGTGGCATACAGGAGATGCCCCATATG
TTCCTCAGGCCTTCATATGACCACACACACCTGCACACTGAGAGATGGGA
ATTTATGAGCTAATCAGGTCAGTGATTCAATACTCTTAAGTTTAATTAGT
ACAAAGATGACTTGAGTCATCAGATCAGTGCATAGAGATTTTCTGTACCT
TGCCCACTCATTTAAGCCATCCTTAGACATAGGCAAGAGACAGTTCTAAC
ACTCCTTTAGACTGGGGCTACTTGGCTATAAAGGCTTTTCACTAGAAGTC
AGTTTAATCACCGCACTCTCTAGATATATTTTTCTTAAGCTCATGTAGAG
CTACTGCTAGCTGGAAGTGTTCAGCAGGAATTTGAAAGCTGGAAAACAGC
CCAAAAATAACGTTGCACCCCCAAGTTCCACAGAATGGACAATCAGAGGC
ACAATAGAGTAAGAGAGAGTTTCTGGTGTTGCAGAAGTTTTTGCCAACTG
TCCTGTCTAGGGCTGTCCAGAGGCCAGGAAAGCTCTGGCTT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGGTGATGACCTACAAATAG
AGTTACAAGACCGTGCCTGCTGTGAAGAGCTCACAGATACATGATGGGGA
TACGACCAGACACCCAGATGCAAGAACCCATGACGGGCACTCCATCTCAC
ACTGAAAGTTGAGCTTTGGTCTTGCTGTCTATTGTAATGCCTCTAAGACC
TAGAATCTGCACGTAGACCCAAGTGACTCTATGTGACCCTGATGCCAAGT
TATTTCTGATTGGCAAATATTTATGTCAACAGCCAATAGATGAGAAGAAG
AGATCTAGGTGGGGCTTAGGTTTCCCAGGCTCGGAGTCAGAAGAGAACCA
CAAGGAAGAGAAGGTGAAAAGGTAAGGAGAAGCTCCCATGGGTTAGGTGA
GCCATAAAAAACATGGCCCTGAGGGCTGGCCAATTGCAGTTAAGAGCAGC
CCAGATGAAATATAATAAGTAATAACTCGGGGTTATAGATAGAAAATAGA
TTCTAATAGCATAGGGTATAGATATGTGCCCATCTCTTGTGCTATTTAAG
GCATATTGTAAATATAAAGGGTGTGTGTGTCTTTTATCCAGAAACTGAAT
TAAAGGCGTTGTAGGAACCCCAGATTGTGATTAAAAAATTTCAACCACAG
AAGGGCCATAGCTCTTCTCTCTCCCTGAGTGCAGCTGAACTCCCCCTCCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_p17.b1 MSMg01no378_p17.b1 CHROMAT_FILE:
MSMg01no378_p17.b1 PHD_FILE: MSMg01no378_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:36 2005
         (546 letters)



>mm_chr5_36828735_36829680
          Length = 946

 Score =  977 bits (505), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Minus

                                                                       
Query: 42  cagacgtggccttgcatgcctgaaacctggtgttggggaacagagacaagcagatcccag 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cagacgtggccttgcatgcctgaaacctggtgttggggaacagagacaagcagatcccag 887

                                                                       
Query: 102 gatcatcatgctagctggactagcccaaacggcaaagttccaattgagtaagagaccctg 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gatcatcatgctagctggactagcccaaacggcaaagttccaattgagtaagagaccctg 827

                                                                       
Query: 162 tctgaaaaaaatcaaggtggcatacaggagatgccccatatgttcctcaggccttcatat 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tctgaaaaaaatcaaggtggcatacaggagatgccccatatgttcctcaggccttcatat 767

                                                                       
Query: 222 gaccacacacacctgcacactgagagatgggaatttatgagctaatcaggtcagtgattc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gaccacacacacctgcacactgagagatgggaatttatgagctaatcaggtcagtgattc 707

                                                                       
Query: 282 aatactcttaagtttaattagtacaaagatgacttgagtcatcagatcagtgcatagaga 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aatactcttaagtttaattagtacaaagatgacttgagtcatcagatcagtgcatagaga 647

                                                                       
Query: 342 ttttctgtaccttgcccactcatttaagccatccttagacataggcaagagacagttcta 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttttctgtaccttgcccactcatttaagccatccttagacataggcaagagacagttcta 587

                                                                       
Query: 402 acactcctttagactggggctacttggctataaaggcttttcactagaagtcagtttaat 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acactcctttagactggggctacttggctataaaggcttttcactagaagtcagtttaat 527

                                                                       
Query: 462 caccgcactctctagatatatttttcttaagctcatgtagagctactgctagctggaagt 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caccgcactctctagatatatttttcttaagctcatgtagagctactgctagctggaagt 467

                                    
Query: 522 gttcagcaggaatttgaaagctgga 546
           |||||||||||||||||||||||||
Sbjct: 466 gttcagcaggaatttgaaagctgga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)