Query= MSMg01no379_c07.b1 MSMg01no379_c07.b1 CHROMAT_FILE:
MSMg01no379_c07.b1 PHD_FILE: MSMg01no379_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:49 2005
(544 letters)
>mm_chr5_97497536_97498479
Length = 944
Score = 984 bits (509), Expect = 0.0
Identities = 521/525 (99%)
Strand = Plus / Minus
Query: 20 aaaatacatactaattcagacaaagcactctacttactaaatgtgttcacaaagctagtt 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aaaatacatactaattcagacaaagcactctacttactaaatgtgttcacaaagctagtt 885
Query: 80 acttaattaaaacaggaattagaaactgggagtcatttcttaggcccttctctttatatg 139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 acttaaataaaacaggaattagaaactgggagtcatttcttaggcccttctctttatatg 825
Query: 140 caaaacagagatgctcagtgtatatgtatgtatatgcatacatgtacatacatatacata 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 caaaacagagatgctcagtgtatatgtatgtatatgcatacatgtacatacatatacata 765
Query: 200 catacacacatatacatacaagcctcagaaactagaaaatcacctatgtttttcataaaa 259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 764 catacacacatatacatacaagcctcagaaactagaaaatcacctatgttttccataaaa 705
Query: 260 tgagcttcttgccctaattctgcaaacctcctcaaacctacactcttccaaaagagatca 319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgagctccttgccctaattctgcaaacctcctcaaacctacactcttccaaaagagatca 645
Query: 320 tttctaaaacacatgtggcaaggcttgatgtatatattaggtagtttgagaaaagttaac 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttctaaaacacatgtggcaaggcttgatgtatatattaggtagtttgagaaaagttaac 585
Query: 380 gattccaagtaaaaacattgagatttcagatttaaagtggaaaaaaattattaaactttg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gattccaagtaaaaacattgagatttcagatttaaagtggaaaaaaattattaaactttg 525
Query: 440 gccatatcaggacaacaaagcagcccctttctgtcaccactcagtgaaggacacaacaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gccatatcaggacaacaaagcagcccctttctgtcaccactcagtgaaggacacaacaag 465
Query: 500 ccatcaccatcgtgcagcccacgctttctctgggcgtgctcaagg 544
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 464 ccatcaccatcgtgcagcccacgctttctctgggcatgctcaagg 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_c07.g1 MSMg01no379_c07.g1 CHROMAT_FILE:
MSMg01no379_c07.g1 PHD_FILE: MSMg01no379_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:49 2005
(517 letters)
>mm_chr5_97316440_97317356
Length = 917
Score = 934 bits (483), Expect = 0.0
Identities = 510/521 (97%), Gaps = 4/521 (0%)
Strand = Plus / Plus
Query: 1 agacagttgggagaaatttgagctgtattaacggcacctagaacaccaaattccctgagg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agacagttgggagaaatttgagctgtattaatggcacctagaacaccaaattccctgagg 260
Query: 61 tttggatatggtttgggtgtgttcacaaaaagctcatggatctcaggcttaaaacttact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggatatggtttgggtgtgttcacaaaaagctcatggatctcaggcttaaaacttact 320
Query: 121 gtgactgtgttgtaaggggagtggagaccttcacaggtaggactgagtggaaggtcctta 180
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtgactgtgttgtaaggggagtgaagaccttcacaggtgggactgagtggaaggtcctta 380
Query: 181 ggtcagtgagcttgcatcatgggatgctgagttatccagagacaaagttgttttaagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcagtgagcttgcatcatgggatgctgagttatccagagacaaagttgttttaagaga 440
Query: 241 gtcagaccccttaaataactctctagcttccttactggctgtgtgctctcttcctctcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagaccccttaaataactctctagcttccttactggctgtgtgctctcttcctctcag 500
Query: 301 gcccacagcactgccagtggccttcacaaagccacactgagtttggcacaatgctgcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccacagcactgccagtggccttcacaaagccacactgagtttggcacaatgctgcaag 560
Query: 361 gctctgtgaactaaatcagcctattaaaaatcagcccaactcgcatatttagtgtgataa 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 actctgtgaactaaatcagcctattaaaaatcagcccaactcacatatttagtgtgataa 620
Query: 421 tgaaaaacaaactaacacaattctacattagatccactacatccaaagctccaagtccaa 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaaaacacactaacacaattctacattagatccactacatccaaagctccaagtccaa 680
Query: 481 ccctcaacttaaaaaaaaca----caaacaaaaaataaaaa 517
|||||||||| ||||||||| |||||||||||||||||
Sbjct: 681 ccctcaactttaaaaaaacaaaaacaaacaaaaaataaaaa 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
