BAC Information

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BAC

Clone NameMSMg01-379D01
Chromosome5 (Build37)
Map Location 37,242,810 - 37,243,124
singlet/doubletsinglet
Overlap genenone
Upstream geneAfap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2
Downstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379D01.T7 (MSMg01no379_d01.b1)MSMg01-379D01.TJ (MSMg01no379_d01.g1)
ACCAG483861AG483862
length746778
length of high quality
(start - end)
579 (42 - 620)315 (72 - 386)
definitionCHROMAT_FILE: MSMg01no379_d01.b1 PHD_FILE: MSMg01no379_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:53 2005CHROMAT_FILE: MSMg01no379_d01.g1 PHD_FILE: MSMg01no379_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGAATGAACCCCACTGCACTGCACTGCACTGCACTGCACTGCACCACA
CTCCCTACACTACACTGCACCACACTCACTGCACAGCACTGTGCTCACTA
CACTGCACTGCACTGTGCTCACAGCATTCAAGACACTGCACTCACTGCAC
CCACTGCACAGCTCCAGCTACACTGCACTCACTGCATAATACTGCATTGC
ATCATGCTCACAGCATTGTGCTCACTGCACTGCACTTCACCCCACTCACT
GCACTGGCTCCCAACTCACTCAACTCTCCAAACTGACTGCTCTTAAATGG
CTCTTCTTCTGGGAGTTGGGTGTATCCTATCTCTGGCTCATTCAGTCAAA
TCTTTCTCTGATTTGTCACTTTGTCTGCCCCTCAATTAGATGTCACTTTC
AAACATAGCTATTCCCTTCTACAAGCTAATTTTACCTTCATTGTTTGGAA
TTAAATGTGTGTACTAAAGGTGTGTTTGCATTCAAGCTGAATCACACAGA
CCTAGAAGATCTTTGAATGTTATCCAAGAAGCCATGCTGCTGGATTAAAA
TTCTTCTACAACAGCCTCTCACGACACAGAAGGCATTCTTACAAGGACCT
GGGTCAGATGCTCACTGTCACCATCTGAACCTTTTTTCTTTGTCTTTTGA
ATTGNNGTTTGTGACAATGGGACATCATAGTATACTTACCGCCCGG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGAAATCACCAAAGACTCTTGGTGAAA
AGTTCAGCAGACAAGAGATGGTCGGGAAGATGCCTGCAGGAGAATCTGTG
AATCTAGGAGCCCGAGAGCTGGGTGCAGCCAAGACTTGGGGCAGATGACA
TGTTTGGATTAAAAACAAAACAAAACAGTGCATCTAACAGCCAGGCAGGG
TTGCCTGCACATTCCAGCATGTTCTGTTGATTTATGGCTGTTGCTAAGCA
ACATAGTACACCGGGGTGGGTGTGATTTTAAAGCTATGGCTCTTGACCAA
AATGAAAATCATTAATGGGGGTGAGGGGAGGGTGGAGTTATTTTTTTTTC
NNTNTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNT
TGNNTCTTTTTTCCTCTTTTCCTCTCTCTTTCCCACTCTCCCTTTCCCCT
CCCCCCTTCTTTTCCCCCCTCCCCTTTTTCTTATCTACTATTTTTTCTCT
TTCTCTTTCTCCTCCCTTCCCTATGCCCTTTATGTCCTTCGCTCCCCTTT
TTTCTTTTTCCTTTTCCCTTTTTTCCTCTCCCCCTTCTCCTCTCTTTCTT
TTACTCCTTTCTTTTTCCCATTTCGCCCTTTTTCTCCTCCTCCTTTTTAT
TTCTTCCCCTCCCCTCCCTTTCTCCCCCCCTCCCCCTTGTCCTTTCCTCC
CTTTTTCCTCTCCTTCCTTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_d01.g1 MSMg01no379_d01.g1 CHROMAT_FILE:
MSMg01no379_d01.g1 PHD_FILE: MSMg01no379_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:53 2005
         (315 letters)



>mm_chr5_37242610_37243324
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaaatcaccaaagactcttggtgaaaagttcagcagacaagagatggtcgggaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaaatcaccaaagactcttggtgaaaagttcagcagacaagagatggtcgggaagat 260

                                                                       
Query: 61  gcctgcaggagaatctgtgaatctaggagcccgagagctgggtgcagccaagacttgggg 120
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gcctgtaggagaatctgtgaatctaggagcccgagagccgggtgcagccaagacttgggg 320

                                                                       
Query: 121 cagatgacatgtttggattaaaaacaaaacaaaacagtgcatctaacagccaggcagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatgacatgtttggattaaaaacaaaacaaaacagtgcatctaacagccaggcagggt 380

                                                                       
Query: 181 tgcctgcacattccagcatgttctgttgatttatggctgttgctaagcaacatagtacac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccttcacattccagcatgttctgttgatttatggctgttgctaagcaacatagtacac 440

                                                                       
Query: 241 cggggtgggtgtgattttaaagctatggctcttgaccaaaatgaaaatcattaatggggg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggtgggtgtgattttaaagctatggctcttgaccaaaatgaaaatcattaatggggg 500

                          
Query: 301 tgaggggagggtgga 315
           || ||||||||||||
Sbjct: 501 tggggggagggtgga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)