Query= MSMg01no379_g03.b1 MSMg01no379_g03.b1 CHROMAT_FILE:
MSMg01no379_g03.b1 PHD_FILE: MSMg01no379_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:08 2005
(252 letters)
>mm_chr5_132215971_132216621
Length = 651
Score = 449 bits (232), Expect = e-131
Identities = 244/248 (98%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 1 agtgagccttctagtcggtcccttctctctcagcataattcaccagcaattgccatcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagccttctagtcggtcccttctctctcagcataattcaccagcaattgccatcagt 260
Query: 61 ttcctgccaattaccatcagcccgaggactccgagagcctaggaagcaaagaagtaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttcctgccaattaccatcagcccgaggactccgagagcctaggaagcaaagaagtcaaca 320
Query: 121 ccccaggatttcccctcctcaccacccccagcctctagctgctctgaggaatgtactgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ccccaggatttcccctcctcaccacccccagcctctagctgctctgaggaatgaactgct 380
Query: 181 ccctgccgcctgtcccaggtggggtacacttgaagcctgatttctccttcggaaatgaga 240
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 381 ccctgccgcctgtcccaggtggggtacacttgaaggctgatt-ctccttcggaaatgaga 439
Query: 241 aggtttgt 248
||||||||
Sbjct: 440 aggtttgt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space: 156006
Effective search space used: 156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no379_g03.g1 MSMg01no379_g03.g1 CHROMAT_FILE:
MSMg01no379_g03.g1 PHD_FILE: MSMg01no379_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:08 2005
(538 letters)
>mm_chr5_132350516_132351450
Length = 935
Score = 694 bits (359), Expect = 0.0
Identities = 394/407 (96%), Gaps = 3/407 (0%)
Strand = Plus / Minus
Query: 132 agtcacttctaagagaggagatctgttgcatgtaagtcatttctttaagcaaggttggaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 agtcacttctaagagaggagatctgttgcatgtaagtcatttctttaagcaaggttggaa 876
Query: 192 ttttcaactccattttttgtttatggtgcaggattccatatagcttaggttatactcaaa 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ttttcaactccattttttgtttatggtgcaggattccatatagcttaggttatactcaaa 816
Query: 252 tcctctttgtagcccaggttggccttgaactcttaaatcatcctgcctctaccctctgaa 311
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcctctttgtagcccaggttgttcttgaactcttaaatcatcctgcctctaccctctgaa 756
Query: 312 tgctggaattacgggtgtgcttgtgggctccttctttgaccaaaagtgagtgtgtgtatt 371
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 755 tgctggaattacgggtgtgcttgtgggctccttctttgaccaaaagcgagtgtgcgtatt 696
Query: 372 ggagtggcagcagtgaggaggtatggagtcttcaggagccattagttagctgattgacac 431
|||||||||| || |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggagtggcag---tggggagatgtggagtcttcaggagccattagttagctgattgacac 639
Query: 432 ctttaaattcaccagagtactagatcataactgtatacacacaatcaaataatggcgggc 491
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 638 ctttaaattcaccagagtactagatcataactgtatacgcacaatcagataatggcgggc 579
Query: 492 agaaagcaggctgcacagtccatgatcagggtaatgggacaggcatg 538
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 578 agaaagcaggctgcacagtctatgatcagggtaatgggacaggcatg 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 935
Length adjustment: 10
Effective length of query: 528
Effective length of database: 925
Effective search space: 488400
Effective search space used: 488400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
