BAC Information

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BAC

Clone NameMSMg01-379J20
Chromosome5 (Build37)
Map Location 126,142,959 - 126,143,344
singlet/doubletsinglet
Overlap geneTmem132b
Upstream geneAtp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379J20.T7 (MSMg01no379_j20.b1)MSMg01-379J20.TJ (MSMg01no379_j20.g1)
ACCAG484184AG484185
length756763
length of high quality
(start - end)		541 (40 - 580)424 (70 - 493)
definitionCHROMAT_FILE: MSMg01no379_j20.b1 PHD_FILE: MSMg01no379_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:25 2005CHROMAT_FILE: MSMg01no379_j20.g1 PHD_FILE: MSMg01no379_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTGGATTAACCAGAGTGGGAAGCAGCAAGGTTCTTGATTCACTAAGGCAA
CAGAAACCCTGGCAGAATCTTCCAGGTATAACCACTTGGGAACACTGGGT
CTGCTCTTAGCTTGCAGCTTCTAGACAAAAAGCTTAAAGGATTAAGCCAT
GGTTCCTCCTACATCAAGTCCGGACCTGACCGGTCAGCATCACTAATAGT
CACATTCATGTCAATCATTTTTGTCACTGTTACAAGATGCTTGGCAACTT
AAATGGAAGACAGGTCCATGGTCACATGACCATGAAAGGGGCATGAAGGA
AGCATCAACACAAGAAGGGACCAAAGACAACAAACACCCTACAAGATGTG
CTCCAAATGACCAAGTTCCTTAAGTTTCTCACCCCTTCCATATGCACCCA
TCAATAGATTAAGTCATTGATTGAAGCCCTCAGGGTCCAATCACTTTTCA
GAGCCCTACCTTTGAACGTTGTACTGTGGACCAAAGCCTTCAACAAAGAC
CTATGGGGGAACATTACTATCTCTTCAAGGATATCTCTGTCTAGCAGTTC
TAAAAGGACAATCTCCAGGGCAACAGTATCAGCACCCCTAGGAGCTTTTA
TAAATATGAGTTCCAGAAAAAGAAAAAAGCAATGCAACTTCCGGGTCTTG
ACCCTCCACCCCCCTCCTTGGTTTTTAAACCCTAAGGTGGGGCCAAAAAA
AGAAAC

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCCCTCTGAAGACAAGGAAGCCGGCTGCTT
GTCATTTTCATTCTGAAAGTTCTCAAAGCTCCTTAACATTCTGTTCCTCT
CAGAGAGTTATTTTTGCTCTAGCTCCTGCATTTTTCATTAACAGAGTGAG
AAGGGGTGTTGTCTCCTCCCCCTGCCCCCCAGTGGCATAATCTGAGTTAT
GAGACTGCTTATGGCAAAGGGCTTCCTGACACATTTGAGTAATAAGAGTC
CAGCCAGGTGATCTTGTTGATGGGTGATACCAGTGTTGGACTGGAGTCCT
AAGCTGGGGCAGTACCAGTCACATCCATAGTGGTGGAAGCCTGGAGGTTC
TTCTGTCAACAGGCTTTATAGTCTTTAAACTCACACACAGATTTGAAGCC
TGAGATCAGCTGTAGAGAGCTATGCTCATAGCAGAAGACAGAAAGCTGCC
ATCCACAGCATCAGTTATGGTGGTCCATCATGATGCATGGCTCATGTTTA
GCTGGAGACACTCTCCGATCATTTCCTGGCTAATCTCAGACGGACCCAGG
GATGCTTACTTTCCTGTTCCTGGTTCCCTGAGAAAACCTCCATTTCTACA
TGTGGTTGTAGTAAATACAACTCCCTCCCCCTTTGCCGGAGTTAATTGGT
CACTATCCCCTACAGACTTCCTACCGTTCTACCCGCTACTCCCTCTTAAG
AAAACAATTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_j20.g1 MSMg01no379_j20.g1 CHROMAT_FILE:
MSMg01no379_j20.g1 PHD_FILE: MSMg01no379_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:25 2005
         (424 letters)



>mm_chr5_126142759_126143582
          Length = 824

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccctctgaagacaaggaagccggctgcttgtcattttcattctgaaagttctcaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctctgaagacaaggaagccggctgcttgtcattttcattctgaaagttctcaaagc 260

                                                                       
Query: 61  tccttaacattctgttcctctcagagagttatttttgctctagctcctgcatttttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttaacattctgttcctctcagagagttatttttgctctagctcctgcatttttcatt 320

                                                                       
Query: 121 aacagagtgagaaggggtgttgtctcctccccctgccccccagtggcataatctgagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagagtgagaaggggtgttgtctcctccccctgccccccagtggcataatctgagtta 380

                                                                       
Query: 181 tgagactgcttatggcaaagggcttcctgacacatttgagtaataagagtccagccaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagactgcttatggcaaagggcttcctgacacatttgagtaataagagtccagccaggt 440

                                                                       
Query: 241 gatcttgttgatgggtgataccagtgttggactggagtcctaagctggggcagtaccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcttgttgatgggtgataccagtgttggactggagtcctaagctggggcagtaccagt 500

                                                                       
Query: 301 cacatccatagtggtggaagcctggaggttcttctgtcaacaggctttatagtctttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 cacatccatagtggtggaagcctggaggttcttctgtcaacaggctttatagtttttaaa 560

                                     
Query: 361 ctcacacacagatttgaagcctgaga 386
           ||||||||||||||||||||||||||
Sbjct: 561 ctcacacacagatttgaagcctgaga 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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