BAC Information

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BAC

Clone NameMSMg01-379M21
Chromosome5 (Build37)
Map Location 43,918,302 - 43,918,663
singlet/doubletsinglet
Overlap geneC1qtnf7
Upstream geneLOC433883, EG665934, Cpeb2
Downstream gene4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379M21.T7 (MSMg01no379_m21.b1)MSMg01-379M21.TJ (MSMg01no379_m21.g1)
ACCAG484329AG484330
length754766
length of high quality
(start - end)		489 (40 - 528)396 (69 - 464)
definitionCHROMAT_FILE: MSMg01no379_m21.b1 PHD_FILE: MSMg01no379_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:39 2005CHROMAT_FILE: MSMg01no379_m21.g1 PHD_FILE: MSMg01no379_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCTCTGTACCCCATTTTTAATGGGGTTATTTGAATTTTCGGTG
TCCAGCTTCTTGAGCTCTTTGTGTATATTGGATATTAGTCCCCTATCAGA
TTTAGGATTGGTAAAAATTCTTTCCCACTCTGTTGGTGGCCTTTTTGTCT
TATTGACAGTATTTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCC
CATTTTTCGATTCTTGATCTTACAGCACAAGCAATTGCTGTTCTGTCCAG
GAATTTTTCCCCTGTGTCCATATCTTTGAGGCTTTCCCCCACTTTCTCCT
CTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATCCACTTA
GACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCCCATTCTTCT
ACATGATAACTGCCAGTTATGCCAGCACCATTTGTTGAAAATGCTGTCTT
TTTTCCACTGGATGGTATTAGCTCCCTTGTCAAAGATCAAGTGACCATAG
GTGTGTGGGTCCTTTGATCCATTTTCATCTACTCCTCTACTGGTGGAATT
GTATTCATGTTTTTGGTATCCTAACAAACTAAACAGCCCTGTGCTTACAG
ATATGATTTTATACCTTTTTTCCCCTTTTATTGAAAATTCCCTCAAATTT
GTTTGGGCCGGTTTCCCAAGAGCCCTTCATTCGGTCACTTTCTTTTTATC
CCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTCCTCTCCTTTGGCTCTTCACCCTCCATG
CGCCAGAGAATGTGTGGGTCTAAAAATTCCCTGGTGGGCTGCCAGGAAGC
AGAATTTCATGGTCAATCACTCTAACTAGACTGATCCTTTCGGGTCACAT
ATTTTATTTTTCCTCCTTTTCATGGCTCTGATTTTATGTTTCCACTTCAC
TTGTTTATTTTGCATATTTCTTTCCCTTCACCTAAAATCACATACAAAAG
GACCGACTGGTATTTATGGAATGTTTGCTAGAAACCCCAGTTATCTAGGG
ACATAGAAACTGAAGGAGACAGATGCACAAATAAAAATGGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGNNNNANNANANGGGNNGNGGGAAAAANAAAAGGAGAG
GAANGGGANAGAAAGGAAGGGGAAGAAAAGAGAGGGGGGAAGGAAAAGAG
GGGNAAAAAGGAAAGAAGAAAAGGGAGANGGGGGGGGGNNNGAAAAAGAG
AGGGAGGAGGAAGGAGGGGAGGAGAGAAANGGGAGGAGGGGGGGANGGGG
AAAAGAAAAAAAAAAAGGGAGAGAATTGGGGAGGGGAAAANAGNAGAGGA
AAAAAGGGAAAANNGGGAGGGGGGGAGAGGGGAAAAGAGAGGNAAAAAAG
AGNAGAAAANAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_m21.g1 MSMg01no379_m21.g1 CHROMAT_FILE:
MSMg01no379_m21.g1 PHD_FILE: MSMg01no379_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:39 2005
         (396 letters)



>mm_chr5_43918143_43918938
          Length = 796

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcctctcctttggctcttcaccctccatgcgccagagaatgtgtgggtctaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atttcctctcctttggctcttcaccctccatgcgccagagaatgtgtgggtctaaaaatt 462

                                                                       
Query: 61  ccctggtgggctgccaggaagcagaatttcatggtcaatcactctaactagactgatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccctggtgggctgccaggaagcagaatttcatggtcaatcactctaactagactgatcct 402

                                                                       
Query: 121 ttcgggtcacatattttatttttcctccttttcatggctctgattttatgtttccacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttcgggtcacatattttatttttcctccttttcatggctctgattttatgtttccacttc 342

                                                                       
Query: 181 acttgtttattttgcatatttctttcccttcacctaaaatcacatacaaaaggaccgact 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 341 acttgtttattttgcatatttctttcccttcacctaaaatcgcatacaaaaggactgact 282

                                                                       
Query: 241 ggtatttatggaatgtttgctagaaaccccagttatctagggacatagaaactgaaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggtatttatggaatgtttgctagaaaccccagttatctagggacatagaaactgaaggag 222

                                                                       
Query: 301 acagatgcacaaataaaaatggagagagagagagagagagagagagagagagagagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 acagatgcacaaataaaaatggagagagagagagagagagagagagagagagagagagag 162

             
Query: 361 ag 362
           ||
Sbjct: 161 ag 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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