BAC Information

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BAC

Clone NameMSMg01-379N14
Chromosome5 (Build37)
Map Location 15,223,756 - 15,224,119
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379N14.T7 (MSMg01no379_n14.b1)MSMg01-379N14.TJ (MSMg01no379_n14.g1)
ACCAG484363AG484364
length752762
length of high quality
(start - end)		529 (41 - 569)468 (70 - 537)
definitionCHROMAT_FILE: MSMg01no379_n14.b1 PHD_FILE: MSMg01no379_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:43 2005CHROMAT_FILE: MSMg01no379_n14.g1 PHD_FILE: MSMg01no379_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACCAGATGACTCCTAAACCTGATGAACGACTTCAGCAAAGTGGCTGGAT
ATAAAATTAACTTAAACAAATCAGTAGCCTTCCTCTACTTAAGGACAAAT
AGGCTGAGAAAGAAATTACGGAAATGACACCCTTCACAATAGTCACAAAT
AATATTACAGAACTTCAAATTATCTAATTCATTAATAAAGTAGGAAGTTA
AACAAAATTACATATTCTTGGCAATCAAATACTCCTTAATGTGTTATCAG
ATGCTCAGGTCATATTGGATCCAAATACAAGAAATATTAAGAGAAACACA
ACAAGTAATTTATTTATTCTTCTGGTCAAAACTGGGACAGAGAAAATGTG
AATCTGTTTCCTCCTCTCCCATAACAATGGGTCACATATAGAAAAAAAAT
GAAAGGCCACATCTGCCCCAACACCCTGAGTAACTGGGACCTCTAGAATC
CAGGGACAAAGGAACACCTGACCAGCCAGTGGCACAGGTTCAGTTTGGTC
TGAACCTGTACCTGGAGCAGACCCAGGGTCCTAGCTCTGCACCCACTCCA
ACAACACCAAGAGGGAGNCCGACTCCCANGTGCTCTGAATACACAAGATC
TCAGTGCCCAACACCCAGAGGAGCTTGACTCCCGGTGCACTAACATGCCA
GAATACAGTTTGAACCTGCACCCCTTGGGGACTGGGGTTTGGACCCATCC
CC

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATG
GTGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTT
GGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAAT
CTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAA
CTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACA
AGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAA
GGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG
TGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTA
TGGATCGATTCGCATTCTTCAACACGATAAAAACCAGTTGTGCCAGCACC
AATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTG
TCGAAGATCAAGTGACCATAGGTGTGTGGGNTCATTTCTGGGCCTTCAAT
TCTATTCCCTTGGGCTACTTGTCTGTCCCTATAACAAAACCCTGCGGTTT
TTACCCCATTTGCTCCGTAATAAAGGCCAAAAAGGGAGAATTGTTGCCCC
CCCTTTAAAAAACCCCACAAATTAAGGTGGGATCCCAAACCCCTTCCTCG
AAACTGTGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_n14.b1 MSMg01no379_n14.b1 CHROMAT_FILE:
MSMg01no379_n14.b1 PHD_FILE: MSMg01no379_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:43 2005
         (529 letters)



>mm_chr5_15223502_15224429
          Length = 928

 Score =  629 bits (325), Expect = 0.0
 Identities = 355/365 (97%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 165 ttacagaacttcaaattatctaattcattaataaagtaggaagttaaacaaaattacata 224
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 618 ttacagaacttcaaattatctaattcagtaataaagtaggaagttaaacaaaattacata 559

                                                                       
Query: 225 ttcttggcaatcaaatactccttaatgtgttatcagatgctcaggtcatattggatccaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcttggcaatcaaatactccttaatgtgttatcagatgctcaggtcatattggatccaa 499

                                                                       
Query: 285 atacaagaaatattaagagaaacacaacaagtaatttatttattcttctggtcaaaactg 344
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 498 atacaagaaatattaagagaaacacaacaagtaatttatttactcttctggtcaaaattg 439

                                                                       
Query: 345 ggacagagaaaatgtgaatctgtttcctcctctcccataacaatgggtcacatatagaaa 404
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 438 ggacagagaaaatttgaatctgtttcctcctctcccataacaatgggtcacatatag-aa 380

                                                                       
Query: 405 aaaaatgaaaggccacatctgccccaacaccctgagtaactgggacctctagaatccagg 464
           ||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||||
Sbjct: 379 aaaaatgaaaggccacatctgccccaacaccctgagtaacaaggacccctaggatccagg 320

                                                                       
Query: 465 gacaaaggaacacctgaccagccagtggcacaggttcagtttggtctgaacctgtacctg 524
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 gacaaaggaacacctgaccagccagtggcacaggttcagtctggtctgaacctgtacctg 260

                
Query: 525 gagca 529
           |||||
Sbjct: 259 gagca 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space:   476442
Effective search space used:   476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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