XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGCCTGTACCCAAAATGTTAATTATTCCTTCATGAAACATTTCATACAT
TGACCTAATCCCCAAAATCACAACAATACAACAAAATGGTGCATATCTCT
GATTATTGAGGGAATTTCATATCTGCTTTTTTCAAGCCTCTCTTCCTATG
GCGAAGTCCATGTATCAAATAATTAATCAGTTAAATGAGCCTGTTTAGAA
TTTGAAAAAAATATATGTATATAGAAATGTGACCATTAGAGGAAATATTT
TATTTGCATATAAACATACATATTCACACATATGTGTGATTTTTATCCAA
TTTAGATTGTCTACCCAAATTTATCTTCAAATATGTAAAATGGAATTTAT
AAAACTATAAATAAGTAAATACATGGAGTTGAAGAGACCTGTGAAGCTAA
TTTAGAAATGAAATGGATTTGTTTATGATAAAAGTGCAAAATTTCCATTA
GAAGGGAACTTTAATGGAAATACCAACATTAAGAAATACCTACAGGAATA
CCCACATGAAGAAAAGAATACTTTTTTTTTCCATTTTATACTCAGAAATG
GTTGCTGTATGAATGTGTGGTGAATTAAGAAATTAGAAATAAGAATTGTA
AACTGGATTACATTTCCATCACAAATTTAGAATTAATATAGTATGGCTCA
GTATCATCAGTATTGTTACTCTTCTGTTTGAGGAGCAAATATN

CTTTGCCTGGGCTGGTGGGCGCCTGTTTCGCCGACXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTATGGGG
TTATTTGATTTTCTGGAGTCCACTTTCTTGAGTCCTTTTTATATATTGGA
TATTAGTCCCCTATCTGATTTACTATATGCAACGATACTTTCTTAATCTG
CTGTTGTCCTTTTTGTCTTGTCTGATGCGTCTTTCGCTTCGTTCCTTCTT
GCGCCGTCATCCGTTCTCGTTTACTCCCTCCCTGATCTTATCCTATCTGT
TCTTGCCTGCTCCAATCTTTTTCCTCTTTTCCCTTGTTCTTTCGTCCTTT
CTCCCTCTCTTCCATTTCTTTCCTTCCTTGCCGGCTTTATCTCGTCCCCG
TATTCTCCGTAGCTCGTCTCCCCCTTTCGCTTTTACCCTTCCTATCCCCC
CCTCCTTATTATTCCTTCTTGTTCCCCCTTTTACTTCCCCCCCCCCCCTC
CTTTTTCTCTTCTTTCGTCTTTTTCCCTCTTTTTTGTTCCACCCCCTCTC
CTCCTCTTTTTCCCCTTTCCCCTCCTTCCCTCTTTCCCCCCTTCTCTTTT
TCCTTTCTTTTCTCCCCTCTCCACTTTCTTTTCCCTTCTTCTTTTTCCCC
GCGTTTTTCCCTTTCCCTTATTTTCTTTGTCTACCCCCCTCCCCTCCTTT
TCCCCTTTTCCCCCTCTTTTTTCTCTCCTCCCCCTCTTTTTTTTTTTTCT
TTTTCCCCCCCCCCTTTCCTCCTCCCTTCGTCCCCTTTTCTCCGTCCTCC
CCCTCTTTTTTCTCCCCTTTTTTTTTCCCTCCCCCCCG

Query= MSMg01no379_o10.b1 MSMg01no379_o10.b1 CHROMAT_FILE:
MSMg01no379_o10.b1 PHD_FILE: MSMg01no379_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:47 2005
         (675 letters)



>mm_chr5_84605802_84606878
          Length = 1077

 Score = 1251 bits (647), Expect = 0.0
 Identities = 666/673 (98%), Gaps = 2/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcctgtacccaaaatgttaattattccttcatgaaacatttcatacattgac 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcctgtagtcaaaatgttaattattccttcatgaaacatttcatacattgac 264

                                                                       
Query: 65  ctaatccccaaaatcacaacaatacaacaaaatggtgcatatctctgattattgagggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaatccccaaaatcacaacaatacaacaaaatggtgcatatctctgattattgagggaa 324

                                                                       
Query: 125 tttcatatctgcttttttcaagcctctcttcctatggcgaagtccatgtatcaaataatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcatatctgcttttttcaagcctctcttcctatggcgaagtccatgtatcaaataatt 384

                                                                       
Query: 185 aatcagttaaatgagcctgtttagaatttgaaaaaaatatatgtatatagaaatgtgacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcagttaaatgagcctgtttagaatttgaaaaaaatatatgtatatagaaatgtgacc 444

                                                                       
Query: 245 attagaggaaatattttatttgcatataaacatacatattcacacatatgtgtgattttt 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 attagaggaaatattttatttgcacataaacatacatattcacacatatgtgtgattttt 504

                                                                       
Query: 305 atccaatttagattgtctacccaaatttatcttcaaatatgtaaaatggaatttataaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atccaatttagattgtctacccaaatttatcttcaaatatgtaaaatggaatttataaaa 564

                                                                       
Query: 365 ctataaataagtaaatacatggagttgaagagacctgtgaagctaatttagaaatgaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctataaataagtaaatacatggagttgaagagacctgtgaagctaatttagaaatgaaat 624

                                                                       
Query: 425 ggatttgtttatgataaaagtgcaaaatttccattagaagggaactttaatggaaatacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggatttgtttatgataaaagtgcaaaatttccattagaagggaactttaatggaaatacc 684

                                                                       
Query: 485 aacattaagaaatacctacaggaatacccacatgaagaaaagaatacttttttttt--cc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 685 aacattaagaaatacctacaggaatacccacatgaagaaaagaatactttttttttttcc 744

                                                                       
Query: 543 attttatactcagaaatggttgctgtatgaatgtgtggtgaattaagaaattagaaataa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attttatactcagaaatggttgctgtatgaatgtgtggtgaattaagaaattagaaataa 804

                                                                       
Query: 603 gaattgtaaactggattacatttccatcacaaatttagaattaatatagtatggctcagt 662
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 805 gaattgtaaactggattaaatttccatcacaaatttagaattaatatagtatggttcagt 864

                        
Query: 663 atcatcagtattg 675
           |||||||||||||
Sbjct: 865 atcatcagtattg 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space:   709555
Effective search space used:   709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)