Query= MSMg01no379_p02.b1 MSMg01no379_p02.b1 CHROMAT_FILE:
MSMg01no379_p02.b1 PHD_FILE: MSMg01no379_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:50 2005
(547 letters)
>mm_chr5_86552000_86552946
Length = 947
Score = 1000 bits (517), Expect = 0.0
Identities = 537/545 (98%), Gaps = 4/545 (0%)
Strand = Plus / Plus
Query: 5 gaattccggtatttccc--taaatactataaacagtacatttttttttcctgaaagttta 62
|||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattccggtat--cacattaaatactataaacagtacatttttttttcctgaaatttta 262
Query: 63 ctggttcacacatgaattcacagaattttgagcaatagatttctctaataaaagatggta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctggttcacacatgaattcacagaattttgagcaatagatttctctaataaaagatggta 322
Query: 123 aacatacacaagcagatgaacaattaactctgcttttaaagaattaaaagttcagcttta 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacatacataagcagatgaacaattaactctgcttttaaagaattaaaagttcagcttta 382
Query: 183 ataacggtattttttaaatcagtttgtactcctagtcagcaattgagacaattaggtagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ataacggtattttttaaatcagtttgtactcctagtcagcaattgagacaattaggtagc 442
Query: 243 tctgtaggcaaaagaacttgttccatagcattagaacccaactttcaggccccgaatctc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctgtaggcaaaagaacttgttccatagcattagaacccaactttcaggccccgaatctc 502
Query: 303 ccacacaaaactggacagacacagtgagtggatctgcaaccctagcgcttctatggagag 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 ccacacaaaactggacagacacagtgagtggatctgcaaccctagcacttctatggagag 562
Query: 363 atgggaggcagagaaggaagacccttggaagcctgtaggccacctagcctggtacacaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgggaggcagagaaggaagacccttggaagcctgtaggccacctagcctggtacacaca 622
Query: 423 acagcaaaccaacaaagagcttctttctcaagcaagtcggaaagcaggactaatgcccaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acagcaaaccaacaaagagcttctttctcaagcaagtcggaaagcaggactaatgcccaa 682
Query: 483 gtacccaagtttaccctctgacttgtgtgtgtgtgtcatggcatgtgtacaacccacatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtacccaagtttaccctctgacttgtgtgtgtgtgtcatggcatgtgtacaacccacatg 742
Query: 543 gtcac 547
|||||
Sbjct: 743 gtcac 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_p02.g1 MSMg01no379_p02.g1 CHROMAT_FILE:
MSMg01no379_p02.g1 PHD_FILE: MSMg01no379_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:50 2005
(576 letters)
>mm_chr5_86687721_86688696
Length = 976
Score = 1083 bits (560), Expect = 0.0
Identities = 572/576 (99%)
Strand = Plus / Minus
Query: 1 caacttatagaaaattacaaagtaaattaaagtttagagtatgcttaaaacttttaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caacttatagaaaattacaaagtaaattaaagtttagagtatgcttaaaacttttaacat 717
Query: 61 gaataaaagagggtcactgagataacatgtaacatagaagcactgggcacagcctgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaataaaagagggtcactgagataacatgtaacatagaagcactgggcacagcctgatga 657
Query: 121 ctcgagttccattctaatacactctgaataacatgcatgccaacacacatacaataaata 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 656 ctcgagttccattctaatacactctgaataacatgcatgccaacacacacacaataaata 597
Query: 181 attttcatttttaaatgaataagacatcatgagcagaatgtctggattaatttgggaaaa 240
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 596 attttcatttttaaatgaataagacatcatgagcaaaatgtctagattaatttgggaaaa 537
Query: 241 ttgttttggaggattctaaacagagttaaaaacttgattcaatatcaaaagagggctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttgttttggaggattctaaacagagttaaaaacttgattcaatatcaaaagagggctatt 477
Query: 301 tcatgtaacaatcgatttagggatgttgtttaaaaatcatattcacataccaccctgggt 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 tcatgtaacaatcgatttagggatgttgtttaaaaatcacattcacataccaccctgggt 417
Query: 361 ccaccctgggttgacaatagacaaaagctgttgtggcaaagcatgtaacttcatgactaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccaccctgggttgacaatagacaaaagctgttgtggcaaagcatgtaacttcatgactaa 357
Query: 421 tacactgaggaaaggaggggtcacaattccaagctagagacggctgtctcatattgaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tacactgaggaaaggaggggtcacaattccaagctagagacggctgtctcatattgaaac 297
Query: 481 cttctctcattaaagccatatagataaataaatggataagtaataaatgcagagactagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cttctctcattaaagccatatagataaataaatggataagtaataaatgcagagactagg 237
Query: 541 aactgactcgttaggcatttgcaaccacccctaaca 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 aactgactcgttaggcatttgcaaccacccctaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
