Query= MSMg01no380_f17.b1 MSMg01no380_f17.b1 CHROMAT_FILE:
MSMg01no380_f17.b1 PHD_FILE: MSMg01no380_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:24 2005
(145 letters)
>mm_chr5_75562782_75563328
Length = 547
Score = 242 bits (125), Expect = 8e-69
Identities = 141/147 (95%), Gaps = 6/147 (4%)
Strand = Plus / Plus
Query: 4 ggaat-ctttcttgtca--agcctctta-tatttggttcctattcttga-tatgcagccc 58
||||| |||||||| || ||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 202 ggaattctttcttg-cataagcctcttactatttggttcctattcttgaatatgcagccc 260
Query: 59 taagaagcaaacacaccccagggggttggaggtctagattaatttcagtaacttaagaat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagaagcaaacacaccccagggggttggaggtctagattaatttcagtaacttaagaat 320
Query: 119 caagtgatttcagttttgaaggaagac 145
|||||||||||||||||||||||||||
Sbjct: 321 caagtgatttcagttttgaaggaagac 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 547
Length adjustment: 8
Effective length of query: 137
Effective length of database: 539
Effective search space: 73843
Effective search space used: 73843
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no380_f17.g1 MSMg01no380_f17.g1 CHROMAT_FILE:
MSMg01no380_f17.g1 PHD_FILE: MSMg01no380_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:24 2005
(548 letters)
>mm_chr5_75693050_75693999
Length = 950
Score = 775 bits (401), Expect = 0.0
Identities = 493/553 (89%), Gaps = 49/553 (8%)
Strand = Plus / Minus
Query: 1 caggccagactggcctacagagttagaccttattcaaaaatccaaaccaacaaactgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 caggccagactggcctacagagttagaccttattcaaaaatccaaaccaacaaactgtaa 640
Query: 61 agtctcacattcaccaatgtcttctcagcacatgatataaaacctggcacttaataggca 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 639 ggtctcacattcaccaatgtcttctcagcacgtgatataaaacctggcacttaataggca 580
Query: 121 attaacaaagccagagacagaatacagacaaggttatattcttaatatccttacagtcca 180
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 579 attaacaaagccagagacagaatacaaacaaggtcatattcttaatatccttacagtcca 520
Query: 181 ttgaggagaaaaaacacaagaccaagtacatataatcccatcatcagagatggtggttat 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 519 ttgaggagaaaaaacacaagaccaattacatataatcccatcatcagagatggtggttat 460
Query: 241 tcattatttgatgacccccaattttcttctactacacatacagataaaaacacacaaaga 300
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 459 tcaatatttgatgacccccaattttcttccactacacatacagataaaaacacacagaga 400
Query: 301 aatgtagcaacaaaaat--ttttttcaatgctgagaatacagcccagagccctacacaag 358
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatgtagcaacaaaaatatttttttcaatgctgagaatacagcccagagccctacacaag 340
Query: 359 ctaggtgggttctctctctctctctctctctctctctctctctctctctctctctttctc 418
||||||||||||||||||||||||
Sbjct: 339 ctaggtgggttctctctctctctc------------------------------------ 316
Query: 419 tctctcagctatttccctaggcccccaaactgcatattttaaacaaattgcaattgtaag 478
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 315 ------agctatttccctaggccccaaaattgcatattttaaacaaattgcaattgtaag 262
Query: 479 atacatacatactatttgtaatctgctcatctttt-ctcctttctnnttt--aaaatccc 535
|||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||
Sbjct: 261 atacatacatactatttgtaatctgctcatttttttctcctttct--ttttaaaaatccc 204
Query: 536 aatacactatagg 548
|||||||||||||
Sbjct: 203 aatacactatagg 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 950
Length adjustment: 10
Effective length of query: 538
Effective length of database: 940
Effective search space: 505720
Effective search space used: 505720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
