XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAATCTGCCATATAACCAATTAACAATATTTTCAAAATCATTATGCTT
CCTTCCAAAATTAAATTCCCTAAACCTTACTGGAAACATGATAGGCAGTT
TGCCAAAAGAAGTGAGGGAACTGAAAAATTTAGAAAGCCTTCTAATGGAT
CACAATAAACTTACTTTTTTGGCAGTAGAAATATTTCAATTGCCCAAAAT
AAAAGAACTTCATCTAGCTGACAATAAACTGGAAGCCATTTCACCCAAAA
TTGAGAATTTCAAAGAACTCAGGCTGCTTAACCTTGATAAAAATTTATTG
CAAAGCATACCAAAAAAAATTTCCCACTGCGTAAATTTGGAATCTCTTAG
TCTTAGTGATAATAATATAGAAGAACTTCCTAAGAAAATCCGTAAGCTTA
AAAATTTGAGACAACTCCATGTAAACAGAAATAAAATGATAACAATGACT
GAAGAAATCTCACATCTTAGTAATATACACATCCTGGAAGTTTCAGGCAA
TCAAATCACACATGTTCCTATTGNAATANNAAACTGCAGAANAATAACAA
GAAGTGAACTGGAATTATACAATATAATGTATTTCCCAGTGGGGGTGTGT
GCTTTGCAATCACTTGACTACTTGAGTTTTAAGGGAAATTAATTTCCCAA
AATCCCTGGGAAATGGCGTTCAATAAACAACTTGTN

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTTATGCTTACGTGGTACAAAGC
ATTTTCTGTGAGTTTTATTTATCTTATTTCATTTAATCCCTACAAGATTA
TGTATACGTACACAATCTTGTGAAATATATATACATATATACATATATAT
TATAACTAAACTTACAAATTAATAAGTGGAGATTGAGGGTTGAAATATTT
TCCACTGTCAGACAAATAAATAGCAGAGTTAGAGTTCAAACAAAATCTAA
ACTACTATAATTCTGATCCCTTCACGACCCCCTCTCCCACCCAGTTTTTC
CCTCACTCCTTCCACTTGTGATGTCAATTTTATTTCCCCTTCTGAGTGAG
ATTCAAGAATCCTCCCTTGGGCCCTCCTGTGTCTTAGCTTCTTTGGGTCT
GTGGATTGTTGCATGGCTATCCTGTATTTTACAGCTAACTTCCATTTACA
AGCGGGTACATACCATCCATGTCTTTCTGGGTCTGGGTCACCTTACTCAG
GATATTTTTTTCTCATTCTATCTAATATTCTATTGTGCAGATGTGCCATA
TTTTCTCTATTTTCTTTGGTTGAGGGACATCCTGCGTGTTTGCAGTTTCT
TGCTATTATGAAAAAAGCTGGTATGAACACCGTTGAAGCAGTGTTCCTTG
TGGGATGATGGAGCATCTTTTATAGATATGCTATGG

Query= MSMg01no380_h17.b1 MSMg01no380_h17.b1 CHROMAT_FILE:
MSMg01no380_h17.b1 PHD_FILE: MSMg01no380_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:34 2005
         (519 letters)



>mm_chr5_3850322_3851240
          Length = 919

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%), Gaps = 2/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaatctgccatataaccaattaacaatattttcaaaatcattatgcttccttc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaatctggaatataaccaattaacaatattttcaaaatcattatgcttccttc 264

                                                                       
Query: 65  caaaattaaattccctaaaccttactggaaacatgataggcagtttgccaaaagaagtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaattaaattccctaaaccttactggaaacatgataggcagtttgccaaaagaagtga 324

                                                                       
Query: 125 gggaactgaaaaatttagaaagccttctaatggatcacaataaacttacttttttggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaactgaaaaatttagaaagccttctaatggatcacaataaacttacttttttggcag 384

                                                                       
Query: 185 tagaaatatttcaattgcccaaaataaaagaacttcatctagctgacaataaactggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaatatttcaattgcccaaaataaaagaacttcatctagctgacaataaactggaag 444

                                                                       
Query: 245 ccatttcacccaaaattgagaatttcaaagaactcaggctgcttaaccttgataaaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatttcacccaaaattgagaatttcaaagaactcaggctgcttaaccttgataaaaatt 504

                                                                       
Query: 305 tattgcaaagcataccaaaaaaaatttcccactgcgtaaatttggaatctcttagtctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattgcaaagcataccaaaaaaaatttcccactgcgtaaatttggaatctcttagtctta 564

                                                                       
Query: 365 gtgataataatatagaagaacttcctaagaaaatccgtaagcttaaaaatttgagacaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgataataatatagaagaacttcctaagaaaatccgtaagcttaaaaatttgagacaac 624

                                                                       
Query: 425 tccatgtaaacagaaataaaatgataacaatgactgaagaaatctcacatcttagtaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccatgtaaacagaaataaaatgataacaatgactgaagaaatctcacatcttagtaata 684

                                               
Query: 485 tacacatcctggaagttt-caggcaatcaaatcaca 519
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 685 tacacatcctgga-gttttcaggcaatcaaatcaca 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)