BAC Information

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BAC

Clone NameMSMg01-380I01
Chromosome5 (Build37)
Map Location 51,650,326 - 51,650,572
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I01.T7 (MSMg01no380_i01.b1)MSMg01-380I01.TJ (MSMg01no380_i01.g1)
ACCAG484863AG484864
length787759
length of high quality
(start - end)
249 (61 - 309)487 (64 - 550)
definitionCHROMAT_FILE: MSMg01no380_i01.b1 PHD_FILE: MSMg01no380_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005CHROMAT_FILE: MSMg01no380_i01.g1 PHD_FILE: MSMg01no380_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCATTT
CCTTCTAAAGCAAAGGAAATGTGAAGGTCTGCTTCTGCTCTGCCCTTCAC
GTTGGCAGTTTTGGTCTCCTGCAAGTGACAAGTTATGTGCTAATGTCAGC
TGACAATTGTGTTTCTTTCTTCCACTTCATGAATATTGTAATTAGAGGAA
ATTCCTCTAAGATTTTGGCAGTAGATTAGTTGTCAATCTTACTTTCTTGG
TTTATTATGCACTCTTGACTCTTTCTGTGTTTTCATAGATATTGTATCAT
GAAAATCCTATTTTTAAAATGGTGTATGATCTTCAAATACATTTTTAAGC
TTCCTGCTTTTCTGCTCCACTCATCTTTTCCAAATACTTATATGTACGCA
GCTATATACACATACATGAACATGTGTGCACACCAACTGCCGATGAGTCT
GAACATATTGCATCTAATATTATAACAACAAATGTAATGTTAGTATATTA
TGAAAAAGAATTGGAGTGAACTCTTTGAGAAGTTTGCTTTACCCACTTAC
TCTGATGGGCAATTGCTATGTAATTCAATGGAAATGAAGCATAATTCTGG
CCTCTTTATTAAAAATTGGTATGCCCTCACGATTATGTGGATCTCATAAC
TTGGCTGCTTGTTTTCCACTAACCTCTGAATCATTTTGTTTTTGTTCCCT
ATTTTTCCTCTCCTCTGGCCCCCTTCTTTTTTTTCCCCCGCCTCACTCCT
TGTTTCGACTCCGCTCTTTTACCCCGCCCCTGCTACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCGCAATTCTCTATAACAGCAACTTTCTACTACAAAAGAAACT
TTGTCAGTGAAGGCTGAGAATAAAGCTGAAAATATAGAAAGCATTCTCCT
ACCATCACCATTTAGAAAATTAATAATAGTAAGTGCTTTCCTAGGGTCTA
TGTACTCTCAGGCCTTTGATTTTGGTAGATTTACAGTTTATCCACCGTAA
CACTCATATCTTTATTTTACCAATGAACAAAGCTTGCTGAGCCAGTTATT
GTTGTGATTCATGAAGTTCATAGCTGAATAAGACTATTACTGGGTTTTTG
TTTTGTTTTTCATTTTGTTTTTTTTCCTTTTTTGTTTGTTTTCCTGCTAA
CAGCCTCTGACACCATGAAAATCAGCCAGTAGGGAGGAAACTTTCAGATG
TGTACCAACTTCAATTCTTCATGTCTTATGATTGAAGTATGTGCTGTCTT
TTGTAAGTATTCAAGAACAGTGGCAATATACTCTAATGGTTTGGAGTTGT
CTGGTCTACTCTTATAAAATACTGAGTGGAAGATATCACACCTCTGACCC
TAACCTTGCTAAACCATGGTCTCTGATAAACATATGATCCTAATTTTTCA
AATCCTAATTTTTTCTGATGGGTTATTCCCGTAGTCTTCCTTCACATGTT
ACCTTAATAATACTTATGGTCTTTTTATACCCCCTTTTACTCCCAGAGTA
TTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i01.b1 MSMg01no380_i01.b1 CHROMAT_FILE:
MSMg01no380_i01.b1 PHD_FILE: MSMg01no380_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:36 2005
         (249 letters)



>mm_chr5_51650126_51650774
          Length = 649

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggaaatgtgaaggtctgcttctgctctgcccttcacgttggcagttttggtctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaaggaaatgtgaaggtctgcttctgctctgcccttcacgttggcagttttggtctcct 388

                                                                       
Query: 61  gcaagtgacaagttatgtgctaatgtcagctgacaattgtgtttctttcttccacttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcaagtgacaagttatgtgctaatgtcagctgacaattgtgtttctttcttccacttcat 328

                                                                       
Query: 121 gaatattgtaattagaggaaattcctctaagattttggcagtagattagttgtcaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaatattgtaattagaggaaattcctctaagattttggcagtagattagttgtcaatctt 268

                                                                       
Query: 181 actttcttggtttattatgcactcttgactctttctgtgttttcatagatattgtatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actttcttggtttattatgcactcttgactctttctgtgttttcatagatattgtatcat 208

                  
Query: 241 gaaaatc 247
           |||||||
Sbjct: 207 gaaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)