BAC Information

Click to search

BAC

Clone NameMSMg01-380I03
Chromosome5 (Build37)
Map Location 28,615,876 - 28,616,123
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
Downstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I03.T7 (MSMg01no380_i03.b1)MSMg01-380I03.TJ (MSMg01no380_i03.g1)
ACCAG484867AG484868
length824748
length of high quality
(start - end)
44 (69 - 112)249 (67 - 315)
definitionCHROMAT_FILE: MSMg01no380_i03.b1 PHD_FILE: MSMg01no380_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005CHROMAT_FILE: MSMg01no380_i03.g1 PHD_FILE: MSMg01no380_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCACAGAGGATTCGTGTAAATTC
AGGTGTTCCCTGACTGCTAAACTTTTGTAATGCATACTCAATGAACTAAA
CACAATCTTTACTAGCCAAATAAAACTCCGTTCCCATGGTTCAAAAACAA
GTTACAATACGCCAAAGAATGGATAATATTCATGGAGAATGTCCACGGTG
GCTGCTGACATGTTTGAACTCGGCCAAGATACAGCTTTTGCACACTGCTC
CCTTCCGACTTATTGATACATCTAATATACCTATATTTAGAACAGATAAC
TACTACATAATCTTTTTCTCTGATAAACTTATGGCTTTCATATTTTTCTC
TTCCATCACAGCTTTTACAGTTTACCCACTTTTTCGTTGTAATGATTTAT
CTTTCTTGAAAATGCCCTCATCATGCTTCTTCTTCACCATGACCCATTTT
TTTTCTCGTGTTTGAATGCCATTTTCCAATCTTTCGATTTTGTTTTTTTT
CCCCAATTCTCTCTCTTTGCCCCGCTACCCTTCCTGCCTTCTTTTCATAC
CTTACTTACTTGGTCAAACCTATTCTTTAAGACCCCCCTCCCACTCTTTC
TTTTTTTATTTATTCTTTTCTTTCTATTTTTCTTTCTCCTCCACTTCTTT
CTTTTTTCTCATTTTTTAAATTATTTCCTCATTACATTTTTTATTTTCTC
TCTCTTATTTCCCTTCTACTCCCTCTTCCTTTTCCTCTTTTCCCCGTATT
ATCCCCCTCCTCCCCCCCTTCTTTTTTCCTCCTCTTCTTCATTTGCTCCC
CCCCTTTTTATCCCCCCCCCTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGAAATTCTCACTTCTTGACTGGAGGATTGGTCAGTAGCCC
CAGCAAGGAACTCTTTGCCTTCCCATGTCCTCATTGAGTTTTTCTGTTCC
ACCTCAGAACCATGGAAAGGGGAAAGGAAAGCAGCGAGGCCTTTGCTACT
GCTGGGACACAGCACCTGACTGGCAGTTTAACAACAGGCATCTCATCACT
TGCTATTCTGAAGGCTGGAAGCCCGAGATCAGCGAGATCAGCAAGATTAG
CACGCTGGCATCTGTTTTTTGGATACCTCCTGCTGCATAGATGCTGCTTT
TAGCCATGTCCTCACATGGCAACAGGCAAAAGGCACCTCTCTGGAGTCCT
TTTCATTGTGACTGAACAACTCAGCTCCTTGTAGCAGTCCTTGAATAGAA
GGTCATCAGTGTGTGAGCTCTGGAGAAGCTGCAAGTGTTATCCTTATAGT
TGGACAGATCCTTTCAGCACCTTCTCTCTCATCTTGTATCTTTGTTTTCT
ACATTCTAATTATATTTATTATTGTGTGTACACACGCAATCCACAATATA
AGTGTGTGTGTGTTTTTTGCCTCACCCGATCCGACAATCGCCGCCCCTTG
GATAACTCCCTTTATTCCCAGCCTAAACACCTGGTATACCCCCCGTTACA
TTAGAAAGCCACTCTGCCATCCATTTTATTGTACCTCTTTTTACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i03.g1 MSMg01no380_i03.g1 CHROMAT_FILE:
MSMg01no380_i03.g1 PHD_FILE: MSMg01no380_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:36 2005
         (249 letters)



>mm_chr5_28615799_28616447
          Length = 649

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacttcttgactggaggattggtcagtagccccagcaaggaactctttgccttcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcacttcttgactggaggattggtcagtagccccagcaaggaactctttgccttcccat 266

                                                                       
Query: 61  gtcctcattgagtttttctgttccacctcagaaccatggaaaggggaaaggaaagcagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcctcattgagtttttctgttccacctcagaaccatggaaaggggaaaggaaagcagcg 206

                                                                       
Query: 121 aggcctttgctactgctgggacacagcacctgactggcagtttaacaacaggcatctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 aggcctttgctactgctgggacacagcacctgactggcagtttaacaacaggcatctcac 146

                                                                       
Query: 181 cacttgctattctgaaggctggaagcccgagatcagcgagatcagcaagattagcacgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 145 cacttgctattctgaaggctggaagcccgagatcagcgagatcagcaagattagcatgct 86

                   
Query: 241 ggcatctg 248
           ||||||||
Sbjct: 85  ggcatctg 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)