Query= MSMg01no380_m13.b1 MSMg01no380_m13.b1 CHROMAT_FILE:
MSMg01no380_m13.b1 PHD_FILE: MSMg01no380_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:57 2005
(550 letters)
>mm_chr5_26575020_26575969
Length = 950
Score = 822 bits (425), Expect = 0.0
Identities = 523/563 (92%), Gaps = 15/563 (2%)
Strand = Plus / Plus
Query: 1 ggtttattgaatgcacatcccatgactgaacaaccagggcaacagctgaaaactgtatgc 60
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 190 ggtttattgaatgcacaccccatgactgaacaaccagggtaacagctgaaaactgtatgc 249
Query: 61 tagacgtttcttagggacagctccatgaaaaaaaccacaaagagctcatgtacaagggct 120
||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 250 taggcatttcttagggtcagctccatgaaaaaaaacacaaagagctcatgcacaagggct 309
Query: 121 ggaaatgctgccctgactcaagccgttttagacataatagttcatattgacctggaattt 180
||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 310 ggaaatgctgccctgactcaagctgttttagacataatagttcatactgaccttgaattt 369
Query: 181 ggaagtcttatgtgaaacatatagatgtggaatttcataagattaacaaacctcataaca 240
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 g-aagtcttatgtgaagcatatagatgtggaatttcataagattaacaaaccgcataaca 428
Query: 241 tacagaacatgattgggtacatggtcg-gcataactctgctctgagccaagattttgttt 299
|||||||| | | ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 429 tacagaacgtaacagggtacatggt-gagcataactctgctctgagccaagattttgttt 487
Query: 300 tgttttgttttacatccatgactgggaagcatattacaggaacagcatgaaatagactgc 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgttttgttttatatccatgactgggaagcatattacaggaacagcatgaaatagactgc 547
Query: 360 tggcttgtaacaaatttgctatagatatggtatggggcataccatacctagtgatacaaa 419
|||||| ||| |||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct: 548 tggcttataagaaatttgctacagatatggtatggtgcataccatacctagcaatacaaa 607
Query: 420 gttctctc------------cttatcagagagaactttgtatcactaggaaagaagtctg 467
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gttctctctgataaggagaacttatcagagagaactttgtatcactaggaaagaagtctg 667
Query: 468 cgtgaccttactatagccttaccttacaagatccatggtctcaacagaagctctttggaa 527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cgtgacctaactatagccttaccttacaagatccatggtctcaacagaagctctttggaa 727
Query: 528 ggaggacagagaatgtgcttgtt 550
||||||||||||||||| |||||
Sbjct: 728 ggaggacagagaatgtgtttgtt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_m13.g1 MSMg01no380_m13.g1 CHROMAT_FILE:
MSMg01no380_m13.g1 PHD_FILE: MSMg01no380_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:57 2005
(474 letters)
>mm_chr5_27679256_27680131
Length = 876
Score = 857 bits (443), Expect = 0.0
Identities = 468/477 (98%), Gaps = 4/477 (0%)
Strand = Plus / Plus
Query: 1 agaagagggaaactttgggaggttgtggcagatgccttttgagacctgaaggaggggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagggaaactttgggaggttgtggcagatgccttttgagacctgaaggaggggaag 260
Query: 61 gatctggcatggcagatgcagaggagagtcacaatagctgagaaggcagctcaagaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctggcatggcagatgcagaggagagtcacaatagctgagaaggcagctcaagaggta 320
Query: 121 gagcctgaatgctgctttcctttccattctgatccgtctgcatccccatctgcacaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctgaatgctgctttcctttccattctgatccgtctgcatccccatctgcacaggag 380
Query: 181 ttcacagcatctccagagcctgagcttagaaactcaaaggctgtagggtgatacttctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacagcatctccagagcctgagcttagaaactcaaaggctgtagggtgatacttctaa 440
Query: 241 atgtcttttctaggaggcggttttaaataaaaggtcactcac--aacctatgtgaggcat 298
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atgtcatttctaggaggcggttttaaataaaaggtcactcactgaacctatgtgaggcat 500
Query: 299 ataaagggagcatgctgcttcatcttt-gctccaatataaatccttttttccagagggtt 357
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct: 501 ataaagggagcatgctgcttcatcttttgctccaatataaatccttgtttccagaggatt 560
Query: 358 gcaagagaatttgctgtgggtgtgggtcataagttcatcacttgcatatttgaaattagc 417
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 561 gcaagagaatttgccgtgggtgtgggttata-gttcatcacttgcatatttgaaattagc 619
Query: 418 ctgaagtcagttttgtttaatgcacacaggactgagcttagtgacaggatcagagtt 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgaagtcagttttgtttaatgcacacaggactgagcttagtgacaggatcagagtt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 876
Length adjustment: 10
Effective length of query: 464
Effective length of database: 866
Effective search space: 401824
Effective search space used: 401824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
