BAC Information

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BAC

Clone NameMSMg01-381E09
Chromosome5 (Build37)
Map Location 124,116,769 - 124,117,226
singlet/doubletsinglet
Overlap geneClip1
Upstream geneP2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a
Downstream geneZcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381E09.T7 (MSMg01no381_e09.b1)MSMg01-381E09.TJ (MSMg01no381_e09.g1)
ACCAG485453AG485454
length736774
length of high quality
(start - end)		459 (36 - 494)454 (75 - 528)
definitionCHROMAT_FILE: MSMg01no381_e09.b1 PHD_FILE: MSMg01no381_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:37 2005CHROMAT_FILE: MSMg01no381_e09.g1 PHD_FILE: MSMg01no381_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGTCGCTATACGACTCACTATTCAAAGAGGATCCGCGGAATTCTGAT
GTTCCCTCTGCCTCTCCGGCCTCACCACTTTAAAGAAGAAGGTTCCATCC
TCCTGAATGCGGAGCTAATGCCAGAGGGATATGGACTTTGTATCAAGACA
TCCTCTTCCCACCAGACAGCAGTGTCTCCCCTGCTGAGGGGCAGAAGCAA
CACAGGTGAGCACACAGAGACACACACACACTACATACATACACACACAG
AGACACACACACACACACACCCCTAAGAGCACAACACCAATAGCACAAGA
ACTCATTCCTCTTTTTTGCGCACTGTTATTTTGGTTCAACCTCAGCCACA
GTTTTCTTTTGTGCCCTGAAAGCTTAGGCTATGGTGAAGAATTCTGAAAA
CTGAGTAGGAAGCAAATCTCAAGCTTAGAGTAACTGCTGCCCTTTCTCTG
CCACTCGGGCACTGAACAGCCACGAGCCCTAATAGGTCCTGTTTACCAAG
CAAGCGCAGCGAAGGTTAAAATGTGGAAGGAGTTCATTTTTTAAATGCCA
AAAGGTCCTGCGGCTTCACTGCCGCTCTGGAATATTTGATCTCCCTGGCA
ATAAACGTATAACGGCCGCCCACCCTGTTGTGTTCCCGCCCTTTTACCTT
CTATAGCCTTATTATTCATTAAATTTGCGTGGGGGCGGGTATACCCTATT
ATATAATCGTTTAAATCGCAATACACTCTCCTCAAN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGAAAGTCAGTTGGATGGCATTT
TGCTGGGGCAAACACGTGAAGGAATGTTTTGTTAAGGTGTGAAAGGCTCA
GGCAGACTCGTGAAGGAACATCTGGCTGAAGCAGACACAGGAGAGAGGAC
GTTCTGCTAAAGCAAGCACATGAAAGGACATGTGATGAAGGATTCTTTGC
TTAGGACACGAATGTATTGGTCTGCCTTACACTGAGTACTTGAGCTGCGT
TTGTCGAGACTCCATAGAAACTTCACCAAAAAACTCCTGGTGGTGTGCTG
CAGTTTGTTGCCACTTCTGAGGACTTGGGCTGATTTTATGAACATACTGA
GGTGAGACCTGTGCTGAGAGTAAAACACGTGGAGGACACGAGATGTTTGG
AGGGTATAACTAGGACTCCACAGAGTTACAGAGACAGAGCTTGGCTTGCT
GGTACAGCTAGATGTGCAAGGCTTGTGGGTCTCGAGCCTTCGCTGATCTT
CTCTTCTCTGAGAGAGGCCCAGGCCAGCACTTCTCCTGGGATTTCTGGCG
GTCCCTCCTGGTGATTCTGCTTGAGGCGGAGGCCGGGTTGTCCCCGGTAA
GTCCTGGTCCTGCTGTTGTTTACCCGATCCCTCCCCGTCTGACTCGCCGG
GGAATCCCCAGGGGGGTTTAGACTGTCTAAATCTCCGCTTTGTTCATCCC
TCCTTTATCTGCCTTTTTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_e09.b1 MSMg01no381_e09.b1 CHROMAT_FILE:
MSMg01no381_e09.b1 PHD_FILE: MSMg01no381_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:37 2005
         (459 letters)



>mm_chr5_124116568_124117426
          Length = 859

 Score =  803 bits (415), Expect = 0.0
 Identities = 447/461 (96%), Gaps = 9/461 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctgatgttccc--tctgcctctccggcctcaccactttaaagaagaaggttcca 62
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctgatgtt---ggtctgcctctccggcctcaccactttaaagaagaaggttcca 258

                                                                       
Query: 63  tcctcctgaatgcggagctaatgccagagggatatggactttgtatcaagacatcctctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcctcctgaatgcggagctaatgccagagggatatggactttgtatcaagacatcctctt 318

                                                                       
Query: 123 cccaccagacagcagtgtctcccctgctgaggggcagaagcaacacaggtgagcacacag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccaccagacagcagtgtctcccctgctgaggggcagaagcaacacaggtgagcacacag 378

                                                                       
Query: 183 agacacacacacac--tacatacatacacacacagagacacacacacacacacac--ccc 238
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 379 agacacacacacacactacatacatacacacacagagacacacacacacacacacacccc 438

                                                                       
Query: 239 taagagcacaacaccaatagcacaagaactcattcctcttttttgcgcactgttattttg 298
           ||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||
Sbjct: 439 taagagcacaacaccaatagcacaagaacacattcctccagtttgcgcactgttattttg 498

                                                                       
Query: 299 gttcaacctcagccacagttttcttttgtgccctgaaagcttaggctatggtgaagaatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gttcaacctcagccacagttttcttttgtgccctgaaagcttaggctatggtgaagaatt 558

                                                                       
Query: 359 ctgaaaactgagtaggaagcaaatctcaagcttagagtaactgctgccctttctctgcca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgaaaactgagtaggaagcaaatctcaagcttagagtaactgctgccctttctctgcca 618

                                                    
Query: 419 ctcgggcactgaacagccacgagccctaataggtcctgttt 459
           ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcaggcactgaacagccacgagccctaataggtcctgttt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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