BAC Information

Click to search

BAC

Clone NameMSMg01-381N07
Chromosome5 (Build37)
Map Location 15,196,261 - 15,196,491
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381N07.T7 (MSMg01no381_n07.b1)MSMg01-381N07.TJ (MSMg01no381_n07.g1)
ACCAG485879AG485880
length751789
length of high quality
(start - end)
445 (36 - 480)231 (76 - 306)
definitionCHROMAT_FILE: MSMg01no381_n07.b1 PHD_FILE: MSMg01no381_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:21 2005CHROMAT_FILE: MSMg01no381_n07.g1 PHD_FILE: MSMg01no381_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTG
CTACGCTGGGTTCTGCAGACTTTGGATACCTGGGTTTGCAACACTGGCCG
CCCCCCTGTAGCCCCTGACCAAGGAAGGTGAAAAATTTAGATGGACATCA
GAACATCAGAAAGTCTTTAAAAATATTAAGGAGGCCTTGCTGAATGCGCC
AGCCTTGGCATCGCCAGATCTAACCAAGCCCTTCTTCCTCTATGTTGATG
AGAGGACGGGGGTGGCCAGAGGAGTTCTTACTCAGGCTCTAGGGCCGTGG
AAGAGGCCGGTGGCATATTTGTCTAAGAAGCTGGACCCAGTGGCCAGCGG
ATGGCCCACACATTTAAAGGCCGTTGCTACAGTAGCCCTACTCGTTAAGG
ATGCTGACAAATTAACTCTGGGACAGCAAATAACTGTGGTAGCCCCCCAC
TCTCTTGAAAGCATTATCCGTCAGCCCTCAGATCGATGGATGACAAATGC
CTGGATGACTCATTACCATACGTTTGCTGTTGACTTGAACGCGTCGCTGT
TTGCCCCCTCCTGCTATTCCCCAATACCTGCCTGCCAAGTGTACCCACCT
GGACTCTTCCGTGGTCCCGTTGTTTCCCCATTGTGTTCCTCCTACATAAA
ACATTTTCCTTACCCCCAATTTTTTTCCACAACACCCCCTTTTCATATTG
CGGCGCCGGTTTTTCTCCCCCTCAATCACCAACCTTTTTCTTTTTGTTTT
T
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGTTCTTTCTCTAGATCCAGA
ACAGGCACAAATGCTGTCTATTTATTAGATGCTCTTCTTGAAACTATGGA
TAATTAAAATATCAGTTCAGTTAACTTGTGGAGAAAAAGAACTCAGAACT
TGGCTATTGATGTTATTACTTACTTTGAATGTATGTGTACATGTGCATTG
TGCCTGAGAGTATGGGTGAGTGAGTGTTGCTGTGTGTGTGTGTGTGTGTG
TGTGTGCTGCCCTCTCCCTTTTTTTTTTTTTTTTCTTTNCTCCCTTCTCC
TCCTCTCTTTCTCTCTCCCTCTTTCCCCTTTTCTCCCCCCCTTCTTTTCC
TTTTTTTTTTTCCCCCCCCCCCCCTTCTTTTCTCCCTTTTCTTTTTTCCT
CTCTCCCCTTTTCCCTTCCCCTTTTCCTCCCTCCCCTTTTTTTCTTTTCT
CCCTTCCCTTTTTTTCCCCTTCCCTCTCTCTTCCTCTCTTCTTCCCTCCC
CCTCTCCCTCTCCCCCTTCTCCTCCTTTCTTCCCTTTCCCCTCCTCTTCC
TTTCTCCCCTCTTTCTTTTTTTCTTTTCTTTCCCCCCTTTTTTTCCCTTC
CCTCCCTTCTTCCTTTCTCCTTTTTTTCCCCTTTTCTCCCCTCCCCTTTT
TTTTTTCCCCTCCCCTCCCCCCCTCTCTTTTTTCTCTCTTCTCCCTTTTT
TTTTTTCCCCTTTTTCTTTTTTTTCCCTTCCTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_n07.g1 MSMg01no381_n07.g1 CHROMAT_FILE:
MSMg01no381_n07.g1 PHD_FILE: MSMg01no381_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:22 2005
         (231 letters)



>mm_chr5_15196061_15196691
          Length = 631

 Score =  408 bits (211), Expect = e-118
 Identities = 226/231 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaggttctttctctagatccagaacaggcacaaatgctgtctatttattagatgctct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaggttctttctctcgatccagaacaggcacaaatgctgtctatttattagatgctct 260

                                                                       
Query: 61  tcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaagaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataactca 320

                                                                       
Query: 121 gaacttggctattgatgttattacttactttgaatgtatgtgtacatgtgcattgtgcct 180
           |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgcct 380

                                                              
Query: 181 gagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)