BAC Information

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BAC

Clone NameMSMg01-381P01
Chromosome5 (Build37)
Map Location 84,075,575 - 84,076,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381P01.T7 (MSMg01no381_p01.b1)MSMg01-381P01.TJ (MSMg01no381_p01.g1)
ACCAG485961AG485962
length693741
length of high quality
(start - end)
444 (62 - 505)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no381_p01.b1 PHD_FILE: MSMg01no381_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:30 2005CHROMAT_FILE: MSMg01no381_p01.g1 PHD_FILE: MSMg01no381_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCATTTCTGTTGGAATTTTGATTGCTATGTTGCACCTTGTTCAGGTATGA
TGCAAATGAGCACAGCTATTGTGAATTGATTGTTATGAGAGTCATGAAAT
ATATATATGAGTTTCACAACTTCATTTCCCATTTACTAAAACCTACATCT
TTTTTTCTTTCCTCTCACAAAGTTCTCTGAGTAGGAGGTGTAACCTACCC
ATAGCAGAGCTCAGTTAATTCTACCCACAACGTCATCCCTTTATGAACCT
CCATATTGACCAATGCACAGTATAAAAGTCAGTTACTATGACCAAAGTGA
AGAGAAGTACAGGCATAAATAAAAAGATTTGGAGTATAGTTTAACATTAT
GATCAATTAGCAAATCAACAGTAGGTTCCCTCTAAAGATGTTGACCACCT
TGTTCATAGGCTATTGATCAGTTTAACAGTTTCACACATGATATCTTTTT
TTTTTAAGCATTTTTATATCTAATCACAAAGTATTTGGTTATCCTGATAA
CCTTATTGCCACTATTGCACCACAGCACATATTAGAACTACCGATTAGTG
CCGTGGTTTCCGACGTCATGTTCTGTTCAATATTATTGACGATAATACCT
TCCCTCTACCCATCAGTGCCTTCTGAACCGCTTATGTTTCTAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATATCTATGCCATGATGGAGTCTTT
CAAAATTAAAACTACAACTAGGTTTAATTTCGAAGGTTCCCTGTGGTTTA
GTAGCTTTCATATTTAATTATCACTTCAGTAAAATTTCAGGAGGGAGTGG
GGATAAACAAGAACGTTCTCTCTGTTTAATAAAAGCTTCATTAATTTATG
TCCTACATACTGTGCTCTTATGTTTGATGAGAGCTAATTAATTATCCTTA
TCTAAATATGTTTTATAACTTTTCCAAGTCATAAATCAGAAACCTTGTTG
ATCAGTTTAATTTACATAAGGTTATACCTGCATGGTAAGCTCTAGAAGGC
CTCGTGAGGTAAGGCAATAAAATATTGGCCAAATAAGGAGATTTAGGCCA
GGCTGGGTTACATGAAACTCTGTTTCAAAGGAGCAAAACATACAAGCAAA
AATAAAAAATGAGGGAAAGTTATAGAAATAAACAAGGAAGAAATAATAAT
TAGTAAGTTTACAAGCCAGAAGGTCAAAGAAGTTTTCAGGAAGGACTCGA
CATGTGTAAATATGCATAAAGAACATTCAAATCCTAATTTACTGTATTAA
CTGCAATTGTCCTGTTGTTTTTTAAATGTTTTTTATATGTATTAATAAAT
GGAATGTCATTCCATTTATTCTCCCATAAATTCTATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_p01.g1 MSMg01no381_p01.g1 CHROMAT_FILE:
MSMg01no381_p01.g1 PHD_FILE: MSMg01no381_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:30 2005
         (570 letters)



>mm_chr5_84075375_84076344
          Length = 970

 Score = 1094 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatctatgccatgatggagtctttcaaaattaaaactacaactaggtttaatttcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctatgccatgatggagtctttcaaaattaaaactacaactaggtttaatttcgaa 260

                                                                       
Query: 61  ggttccctgtggtttagtagctttcatatttaattatcacttcagtaaaatttcaggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttccctgtggtttagtagctttcatatttaattatcacttcagtaaaatttcaggagg 320

                                                                       
Query: 121 gagtggggataaacaagaacgttctctctgtttaataaaagcttcattaatttatgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtggggataaacaagaacgttctctctgtttaataaaagcttcattaatttatgtcct 380

                                                                       
Query: 181 acatactgtgctcttatgtttgatgagagctaattaattatccttatctaaatatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatactgtgctcttatgtttgatgagagctaattaattatccttatctaaatatgtttt 440

                                                                       
Query: 241 ataacttttccaagtcataaatcagaaaccttgttgatcagtttaatttacataaggtta 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacttttccaagtcatcaatcagaaaccttgttgatcagtttaatttacataaggtta 500

                                                                       
Query: 301 tacctgcatggtaagctctagaaggcctcgtgaggtaaggcaataaaatattggccaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacctgcatggtaagctctagaaggcctcgtgaggtaaggcaataaaatattggccaaat 560

                                                                       
Query: 361 aaggagatttaggccaggctgggttacatgaaactctgtttcaaaggagcaaaacataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggagatttaggccaggctgggttacatgaaactctgtttcaaaggagcaaaacataca 620

                                                                       
Query: 421 agcaaaaataaaaaatgagggaaagttatagaaataaacaaggaagaaataataattagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaaaaataaaaaatgagggaaagttatagaaataaacaaggaagaaataataattagt 680

                                                                       
Query: 481 aagtttacaagccagaaggtcaaagaagttttcaggaaggactcgacatgtgtaaatatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtttacaagccagaaggtcaaagaagttttcaggaaggactcgacatgtgtaaatatg 740

                                         
Query: 541 cataaagaacattcaaatcctaatttactg 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 cataaagaacattcaaatcctaatttactg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)