XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGATGGATACCAAATGGCTGAGAAGCATCTGAAAAAATGTTCAGCATCAC
TAATCATCAAAATGCAAATCAAAACAACCCTGAGATTCCACCTCCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAAAAAATTGGACAT
AATACTACCGGAGGATCCCACAATACTCTCCTGGGCATATATCCAGAAGA
TGTTCCAACTGGTAATAAGGACACATGCTCCACTATGCTCATAGCAGCCT
TATTTATCATAACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACCCAATCACAATAGAACGCACATGAT
ATGTACTCACTGATAAGTGGATATTAGCCCTATATACTTAGAACACCCTC
GATATAAGATACTATTTTGTGACACCCATGAAACTTCCGAAAAATTAATA
CCTCTGTGTGGAAACTTTTTTCTCTTTTTAAAATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTCTCACAGAGTGAACCTGTCAAAATTCTTTGAAAA
TACAAAAGTGAACATCTGACATCAAAGAGAGAGCTTCGGAGAGCAGAGCC
AGCTGTGGGGACTTTGCTAGCAGGACTGACGTGGTCAAAGCCAGAGTGAA
TTTAAGTGTCAGGAACAAACAATAATGTGCATTTGACTGTGACAAGACGT
CACCAAGATGATAATCTTCCTTTAGGAAAATACAATACAGCAACACAGAA
ACCATCCGTTTAGGAAAGAAAACATGTTTCTTTAACCTACTGCCCCTGGT
GTGTACTCCTGACAGAGAAAAACAGCTCTTTGACCTGTTTATCTGCTTAC
AAAGATTAGCAGTCAACAATTGGTTTGTCAAACTGGCAGTCGGTGCCGCC
GATGGACTTTGTGGCCAATGGATATTCATCAAGATCATAACTACTAGTAT
TGGAAATGACTATAATTGTGAATGCATACTGAAACATCAAGAGGTTCATA
AAGGAGAAATCTATTACAAGTTGATAGGAGGAAGAGACATAGCTTCCTTT
CACATTGGTGGAGACTCTTCANAGACCAGATGACAAAGAATGGCTCGGTC
CCTTGGGGCCACTCTGACCAAGCTCCTTCTGAAAGTGTTGTGTATGTATG
AGAAATATTGGCTTGCCATGCGCTAGAG

Query= MSMg01no382_b03.g1 MSMg01no382_b03.g1 CHROMAT_FILE:
MSMg01no382_b03.g1 PHD_FILE: MSMg01no382_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:41 2005
         (575 letters)



>mm_chr5_9047231_9048205
          Length = 975

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctcacagagtgaacctgtcaaaattctttgaaaatacaaaagtgaacatctgacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agtctcacagagtgaacctgtcaaaattctttgaaaatacaaaagtgaacatctgacatc 628

                                                                       
Query: 61  aaagagagagcttcggagagcagagccagctgtggggactttgctagcaggactgacgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaagagagagcttcggagagcagagccagctgtggggactttgctagcaggactgacgtg 568

                                                                       
Query: 121 gtcaaagccagagtgaatttaagtgtcaggaacaaacaataatgtgcatttgactgtgac 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcaaagccagagtgaattcaagtgtcaggaacaaacaataatgtgcatttgactgtgac 508

                                                                       
Query: 181 aagacgtcaccaagatgataatcttcctttaggaaaatacaatacagcaacacagaaacc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 507 aagacgtcaccaagatgataatcttcctttaggaaaatataatacagcaacacagaaacc 448

                                                                       
Query: 241 atccgtttaggaaagaaaacatgtttctttaacctactgcccctggtgtgtactcctgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atccgtttaggaaagaaaacatgtttctttaacctactgcccctggtgtgtactcctgac 388

                                                                       
Query: 301 agagaaaaacagctctttgacctgtttatctgcttacaaagattagcagtcaacaattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agagaaaaacagctctttgacctgtttatctgcttacaaagattagcagtcaacaattgg 328

                                                                       
Query: 361 tttgtcaaactggcagtcggtgccgccgatggactttgtggccaatggatattcatcaag 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 tttgtcaaactggcagtcggtgccgccgatggactttgtagccaatggatattcatcaag 268

                                                                       
Query: 421 atcataactactagtattggaaatgactataattgtgaatgcatactgaaacatcaagag 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 267 atcataactactagtattggaaatgactataattgttaatgcatactgaaacatcaagag 208

                  
Query: 481 gttcata 487
           |||||||
Sbjct: 207 gttcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)