Query= MSMg01no382_j02.b1 MSMg01no382_j02.b1 CHROMAT_FILE:
MSMg01no382_j02.b1 PHD_FILE: MSMg01no382_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:21 2005
(410 letters)
>mm_chr5_132550502_132551311
Length = 810
Score = 706 bits (365), Expect = 0.0
Identities = 395/405 (97%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 7 gaattctgcagaatgtc-tggagagggagctctgggagcagcgcgcttagctggagagac 65
||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 207 gaattctgcagaatg-catggagagggagctccgggagcggcgcgcttagctggagagac 265
Query: 66 gcggatgagctgtggagagctgcaggcaaaaataaagtgggaaggcatccaaagctgcag 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acggatgagctgtggagagctgcaggcaaaaataaagtgggaaggcatccaaagctgcag 325
Query: 126 ctgcgctagcccattaaaaagctgagactcattctgttgttcgaccccacgcttagcacc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgcgctagcccattaaaaagctgagactcattctgttgttcgaccccacgcttagcacc 385
Query: 186 gcataactattcatcaaagaaatttcagtgcaattaattaaattattcccatgtctgggc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcataactattcatcaaagaaatttcagtgcaattaattaaattattcccatgtctgggc 445
Query: 246 tgcggagtcgttattccaatatcaactttcactcactctctcttaagctcgcgtttgcat 305
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 tgcggagtcgttattccaatatcaactttcactcactctctcttaagctcgtgtttgcat 505
Query: 306 gccaagtcactactctggggttggccagtctcaataaagctgggctcctcgtcggtcaca 365
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 506 gccaagtcactactctggggttgtccagtctcaataaagctgtgctcctcgtcgctcaca 565
Query: 366 caggctatcatttctcttttttattgccattgattttccactagg 410
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 caggctatcatttctcttttttattgccatttattttccactagg 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_j02.g1 MSMg01no382_j02.g1 CHROMAT_FILE:
MSMg01no382_j02.g1 PHD_FILE: MSMg01no382_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:21 2005
(516 letters)
>mm_chr5_132712374_132713289
Length = 916
Score = 967 bits (500), Expect = 0.0
Identities = 512/516 (99%)
Strand = Plus / Minus
Query: 1 ctcctgaattgttaattcagttgtgaaagagttttggcatgtttgcaccaggataacctt 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 ctcctgaattgttaatgaagttgtgaaagagttttggcatgtttgcaccagtataacctt 488
Query: 61 tcaggttttcagtacagtgcattttctattatattctctgccccatggtgttggtttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcaggttttcagtacagtgcattttctattatattctctgccccatggtgttggtttctt 428
Query: 121 actcataaccaacatgattgcttgaagatttgtttaagcagaaaaagtaatggaagaagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 427 actcataaccaacatgattgcttgaagatttgtttaagcagaaaaagtaatggaggaagt 368
Query: 181 gaatttttacatatttaaagaataagttaagtcataattgaaagtgtttaaagtaggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaatttttacatatttaaagaataagttaagtcataattgaaagtgtttaaagtaggctt 308
Query: 241 tagactttgttatttcagatactcaccaaatacagactaagtgttaagcagagtcagctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagactttgttatttcagatactcaccaaatacagactaagtgttaagcagagtcagctg 248
Query: 301 tgttgtccataccctgttctgttcctgctcacaagagccatgtcgtgtctttctgtccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgttgtccataccctgttctgttcctgctcacaagagccatgtcgtgtctttctgtccct 188
Query: 361 gcccttctccttctgcctcctgttctcttactcctctcatctcaaagctctctgtctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gcccttctccttctgcctcctgttctcttactcctctcatctcaaagctctctgtctctc 128
Query: 421 cctcccctctaccctcttccccaccaggactaatacattacttttgagccaaacatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cctcccctctaccctcttccccaccaggactaatacattacttttgagccaaacatttct 68
Query: 481 tgaatgccatatttataccaattttgcccttttcag 516
||||||||||||||||||||||||||||||||||||
Sbjct: 67 tgaatgccatatttataccaattttgcccttttcag 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
