BAC Information

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BAC

Clone NameMSMg01-382P03
Chromosome5 (Build37)
Map Location 83,736,344 - 83,736,958
singlet/doubletsinglet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382P03.T7 (MSMg01no382_p03.b1)MSMg01-382P03.TJ (MSMg01no382_p03.g1)
ACCAG486729AG486730
length743728
length of high quality
(start - end)
562 (32 - 593)598 (60 - 657)
definitionCHROMAT_FILE: MSMg01no382_p03.b1 PHD_FILE: MSMg01no382_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:50 2005CHROMAT_FILE: MSMg01no382_p03.g1 PHD_FILE: MSMg01no382_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAAGTTA
TCCGCTGTGGTAAAAGATTTTATCCAAAGACCTGTTAAGTCTCTGTGATC
TGGAGGAAATACAGCCATGCCTTTCATCCCAGGAGACAGAGGCAAGAGAT
AAATCCAAAGCCACCCGGGTATAGAACAACTTTCCCATAAAGAAAATTTT
GGACCTTTAATCCCAGCACTCAGGAGACAGAGGCATGCAGATCTCTGCAT
TCCAGTCAGACAGTTCTGATCAGTTGGTTTGCTTGAGTCAGTGAGTTGAG
AGGCAGTTTAGTAAAATGGACTTTGTGGCAGTTCAGTTTATGGATTTTAG
AGGCAGTGTTTGCAGGGACAGTTTTACAGAGTCAAGGTCCAGAAAGAACA
AGCTAGGCACAGGTGAAGACAGAATGAACAGGGAATGAGAAGGATTCAGA
AGATTAGGACAGATTGCCACAGTTAGTTTGAGACCAATCAGAGCAATATA
GTGAAAAGCAGAGAGAGTTCAGATTAAATCAGTCAATTTGGAGAGGAGTT
TGAGCCAGAACAGCTCAGTTGAAGCAGCCAGTCATAGTTTAGAAAGAGCT
AAACTATGGTTTTATCAGTGAGCTTCAGAGAAGACTATTATATTAGGCAA
ATAAAGGATACTTTTACCAGGCATAACCTATGAGTTTTTGAATGATGGTC
GGTTTTTGTGGTGAGGGACCCATAATATTTGAATATATTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCTTTACTGCTTCTCTTCTTCATTGCTTATCCTGCTAGTG
CAGCTGGAAGCTTCTAATGAACTCATGGCTGATGTCTCTCACCTTAGCAC
AATCCCAGGGAAGAAAATTTACTCTTCATCATAAGTTTGCTCAAAGAATC
CACGAATACTTAAATCATTGTAGGTCAGATTTACCTACCTGAAATATCTT
TAACTAAGCCTGCTCAAGCTCCATGTTAAATATTATATATATATATATAT
ATATATATATATATATATATATTACAAATGAATGCATCAGTAGTTTTAAC
CTTAATATTCCTGTATTTCAGAAGAACTAATACTATTTTAAATTTAATTA
TTAGCCTAACAATTTAGTACTCAAAGGCTGAAGAGAGTTTGGAAACTAAA
AACAAATTCATAATACCACAGGTCCCATTATACTAACCCTCATTAAGGGC
CTCATTACTAAACATGGAAGGGGAATATATCTTAAAATTAATTTGGAAAA
GTAGTAAATTAATAAATATAAACATAAACACATGACTTAGAGGTTTTTTT
TTAACATATAACTGAGCATGTATGTTTATTAGTTTTTAAAATACTCATTT
ATTTAATGTCTATGGGTGCTTTGTTTACAAACAAGTCTTTCTTAATAAGT
ACGCAGCGACTTTGAAGAACGGAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_p03.g1 MSMg01no382_p03.g1 CHROMAT_FILE:
MSMg01no382_p03.g1 PHD_FILE: MSMg01no382_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:50 2005
         (598 letters)



>mm_chr5_83736158_83737158
          Length = 1001

 Score = 1085 bits (561), Expect = 0.0
 Identities = 594/615 (96%), Gaps = 17/615 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttactgcttctcttcttcattgcttatcctgctagtgcagctggaagcttctaatg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcctttactgcttttcttcttcattgcttatcctgctagtgcagctggaagcttctaatg 246

                                                                       
Query: 61  aactcatggctgatgtctctcaccttagcacaatcccagggaagaaaatttactcttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aactcatggctgatgtctctcaccttagcacaatcccagggaagaaaatttactcttcat 306

                                                                       
Query: 121 cataagtttgctcaaagaatccacgaatacttaaatcattgtaggtcagatttacctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cataagtttgctcaaagaatccacgaatacttaaatcattgtaggtcagatttacctacc 366

                                                                       
Query: 181 tgaaatatctttaactaagcctgctcaagctccatgttaaatattatatatatatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaaatatctttaactaagcctgctcaagctccatgttaaatattatatatatatatata 426

                                                                       
Query: 241 tatatatatatatatatatatat--------------tacaaatgaatgcatcagtagtt 286
           |||||||||||||||||||||||              |||||||||||||||||||||||
Sbjct: 427 tatatatatatatatatatatatatatatatatatattacaaatgaatgcatcagtagtt 486

                                                                       
Query: 287 ttaaccttaatattcctgtatttcagaagaactaatactattttaaatttaattattagc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttaaccttaatattcctgtatttcagaagaactaatactattttaaatttaattattagc 546

                                                                       
Query: 347 ctaacaatttagtactcaaaggctgaagagagtttggaaactaaaaacaaattcataata 406
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 547 ctaacaatttagtactcaaaggctgaacagagtttggaaactaaaaacaaattcataata 606

                                                                       
Query: 407 ccacaggtcccattatactaaccctcattaagggcctcattactaaacatggaaggggaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ccacaggtcccattatactaaccctcattaagggcctcattactaaacatggaaggggaa 666

                                                                       
Query: 467 tatatcttaaaattaatttggaaaagtagtaaattaataaatataaacataaacacatga 526
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 667 tatatcttaaaattaatttggaaaagtagtaaattaataaatataaaaataaacacatga 726

                                                                       
Query: 527 cttagag---gtttttttttaacatataactgagcatgtatgtttattagtttttaaaat 583
           |||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cttagagaaggattttttttaacatataactgagcatgtatgtttattagtttttaaaat 786

                          
Query: 584 actcatttatttaat 598
           |||||||||||||||
Sbjct: 787 actcatttatttaat 801



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 221 atat-tatatatatatatatatatatatatatatatatatatat 263
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atatatatatatatatatatatatatatatatatatatatatat 412



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 221 atat-tatatatatatatatatatatatatatatatatatatat 263
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atatatatatatatatatatatatatatatatatatatatatat 418



 Score = 76.1 bits (39), Expect = 7e-18
 Identities = 42/43 (97%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 221 atat-tatatatatatatatatatatatatatatatatatata 262
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atatatatatatatatatatatatatatatatatatatatata 411



 Score = 76.1 bits (39), Expect = 7e-18
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 225 tatatatatatatatatatatatatatatatatatatat 263
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatatatatatatatatatatatatatatatatatatat 424



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                 
Query: 226 atatatatatatatatatatatatatatatatatatat 263
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atatatatatatatatatatatatatatatatatatat 426



 Score = 68.4 bits (35), Expect = 1e-15
 Identities = 41/43 (95%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                      
Query: 221 atat-tatatatatatatatatatatatatatatatat-atat 261
           |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 449 atatatatatatatatatatatatatatatatatatataatat 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 8
Length of query: 598
Length of database: 1001
Length adjustment: 10
Effective length of query: 588
Effective length of database: 991
Effective search space:   582708
Effective search space used:   582708
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)