XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAAGCTAT
TGATATAAGCAGCCATATCTCCTATTTTGCCTATCTTATAGCAGAAGTTG
CTGATGCAGGCAGACCTGAAGTAAATAACTGAAACTAAAGTGTTGTAGAG
GCAGATTTTGAACTCAGATTGCCATATCAAAACATGCACTTGTATCAATT
CCACCACACTAACAATGTACTGTTTCCCTTTCAAAAATGTACAGAGATAA
TATGGGATGTTTTGCTTTTTCAGGGGATAAAATTTACATTTTTATATTGC
TTATAATTCCAGTATTCAAAAACAATGTGGTTTGTATGAGGGGAATATTA
AATTATGAGAGGTAGTTATTATTTCTTTTTTCTTATAGGATCTTGAAACA
AATCGCAGAAGAATGCAGTTAGACCAGAATTTTCTCTGTGTAAGGAAAAA
GCATGATAAATAACAAACAAGGGTTAGGCATTGCTATGGTTATCATGTGG
CTTATCTTCCAAATGTTTACTTTCTCTTATCTTGGTTCCCAGGGTGGAGA
TGGTGAAATCTTTAAAATGGTGGCTTAGTACAGGGTAATTAAGTAACCAC
CCTCCATCTCATAAGTGCACATCTTGTGAGACTGCATCAATTCTCTCTTA
TGACTGGGGTGGGCTTGACCAGAAGCAGTTGTTTAATGAGGCTGCCCTAT
TATTTTGGCTTCCTGCACGGACTACATTCACTGCCCACCTCCCCTACATG
G

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCATGGGAGCTCAGAAAGTACTGAAAGTCCG
TGGTGTGAAAATATTCTACAAACTTAAGGAGATAAATGCATTTGCTCATT
ATGATTTACCAATGGTGAGAGGAAACAGATTTGGTGACTGTATTCAAAGT
TTTTAACAAAGAATTTGTGGGAAAATAATAAAAATGAAGGCGCTGTTTGG
TTGCTACTAATATCTAGGGATAAATTGGCTATGAAAAGAATGACTCCATG
ATAACATTAACCAACTTCTAGCATGTCTGAATATGGTCAAGGAAAACAAC
TAACTCAGAGAGAACATTGATCAGCTCCAGGTGTGTATCAAGGGTCTCTA
AGTTTCTAAGTATGTCCTGGAAGAGAATATCCTTTCCATCGTTCACAGAA
CTCAAGCTCTGGAAAACCACATTATAGTGTCAGCTGAATTAGAGTGAAAA
TTCAAGTCCCGGTTTTTAGAGGGTGTCAGAAGTTTAAAATGGGGGGAATT
AATTGGCCAAGAATGGGATACTGTACATTGAAATGGAGATGTATGGGAGG
TCCCTATTAAATCCGAGAACTAAGCACCTTCAGATTTTCAAGGATTTCTC
TCACCTAAGGAAGTAGTCTTTCCACACTCAGCAGAGGATGTACTGTCACT
CCCCCCATGAAATACTTCCTTTTTTCATTTTGACCGGAAAAATTATTCCT
TCATTTAC

Query= MSMg01no383_a03.b1 MSMg01no383_a03.b1 CHROMAT_FILE:
MSMg01no383_a03.b1 PHD_FILE: MSMg01no383_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:55 2005
         (541 letters)



>mm_chr5_6338730_6339672
          Length = 943

 Score =  994 bits (514), Expect = 0.0
 Identities = 533/540 (98%), Gaps = 2/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaagctattgatataagcagccatatctcctattttgcctatcttatagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataaagctattgatataagcagccatatctcctattttgcctatcttatagca 263

                                                                       
Query: 64  gaagttgctgatgcaggcagacctgaagtaaataactgaaactaaagtgttgtagaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagttgctgatgcaggcagacctgaagtaaataactgaaactaaagtgttgtagaggca 323

                                                                       
Query: 124 gattttgaactcagattgccatatcaaaacatgcacttgtatcaattccaccacactaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattttgaactcagattgccatatcaaaacatgcacttgtatcaattccaccacactaac 383

                                                                       
Query: 184 aatgtactgtttccctttcaaaaatgtacagagataatatgggatgttttgctttttcag 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 aatttactgtttccctttcaaaaatgtacagagataatatgggatgttttgctttctcag 443

                                                                       
Query: 244 gggataaaatttacatttttatattgcttataattccagtattcaaaaacaatgtggttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggataaaatttacatttttatattgcttataattccagtattcaaaaacaatgtggttt 503

                                                                       
Query: 304 gtatgaggggaatattaaattat--gagaggtagttattatttcttttttcttataggat 361
            ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 504 atatgaggggaatattaaattatcagagaggtagttattatttcttttttcttataggat 563

                                                                       
Query: 362 cttgaaacaaatcgcagaagaatgcagttagaccagaattttctctgtgtaaggaaaaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 cttgaaacaaatcgcagaagaatgcagttagaccagaattttctctgtgtaaggacaaag 623

                                                                       
Query: 422 catgataaataacaaacaagggttaggcattgctatggttatcatgtggcttatcttcca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catgataaataacaaacaagggttaggcattgctatggttatcatgtggcttatcttcca 683

                                                                       
Query: 482 aatgtttactttctcttatcttggttcccagggtggagatggtgaaatctttaaaatggt 541
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgtttactttctcttaccttggttcccagggtggagatggtgaaatctttaaaatggt 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space:   495423
Effective search space used:   495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)