CGGCCGCTATACGACTCCTATATTGCAGAGGATCCGCGGAATTCCTAAAA
TGTCTACCTTGGACCTGACAAAGCTTGTGCTCCGGATCCTCGGGAGAACT
GGTACTGTTTTCTCATTTGTATTTTCCCCAAGGACCTGGCATCTGCAGTG
TTAGCACAGAGTGAAGCACGGTGTGTGGATGTAGATAGTCCAAAGAGTCA
CTTGTTTTTATCTGTTTGTTTGTTTGTTTGTTTGTTTCTGTCTGTTTGTT
TGTTTGTCTTTATCTGTTGTTTAGGAGTTTAATTGTGTGCCTTGTCCCAG
GCTTCCAATCACTGTCATACTGAACATTATCATTACATGAAAACAGGTAA
ATATAGAAAACACTCAACATCTTTTTTTGTGTGTGTGTGATTAAAAAATG
AGGGGGCGGAAGAAAGGGAAATGTCAAGTCTTGCCTGAAGCAAGCACATA
CAGGGACATCCATTCTGTACCCGAGGAAGAGTTAAATGTCCCCTGCCTTT
GGAACCAGTGCTCCGGCAGCAGGCAAACCTGGCTGCCATAATGCAAGCAC
CCACGGTTACCATTTGCTGCTGTTTCCTATCACCACCGAAGAGAACCTCC
CCACTGGGGACCCCACCGGAAAACACTTTCGTTTTCTTGCCCCCTGCATA
TTTTATATTTATTGTTCCATGGAAAATTTCTGACAGAATATTCCAATTAG
CCCTTTGCCTTTACTAATCCCTCAATACCTCTCTGTGTTCGGCAATCTAA
TCCTCCCTTTCTTTT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCGGAAATTCTAANCTTTCATATTGGTGTTTGTGTGTGTNG
AACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTGTGTGTGTGTGTGTCTCTCTTCCTAGTCCATTTAACGT
TGCTTTTATGTAGATGTGTTAAGAACTGACCACTCGGAATTGGTTATTCT
ATCAAAGGGCTGAAATGTGGATGTAGAGAACTCATTTTCCTTCTCTGAAT
GACGAGGGACTGTTTTTTTTTTCCAAGGAGTGGGGAGATAAAGAAATTCG
GGTTTTTGGGAGAAGGCGTAGGAGGAGGAGACGGGTGGATGTGTGAAAAA
TCGTAAACAAAGGAAGCTTCTGTTAAGTTGGAACAGGATGTGAGGAGGAA
TAGAAATCTATGAGCAAAGGATGAAAAGAATATAAGAGTCAATGACAGAA
GATGATGGAGATAATGAACGAGAAGACAGATCATAAGTAGGAGACTATAA
GGAAATTCGTTGTATAAGAGGGGTCTTCGAAAGCAGCTTAACGTATAACG
GTAAAAAATTAAAACATGAGTAAGAAATGGTCATGAAGAAAACATGATAA
TTAATGAGATGGATAAGATAGTACCTATATAAGCAATTTAAACTCTAATA
ACACAATATATAAGATGTATACGACTCAGATTATAATGTAAAGGAGTAGA
TCATGTAAAAAATGATATTAGAAG

Query= MSMg01no383_m17.b1 MSMg01no383_m17.b1 CHROMAT_FILE:
MSMg01no383_m17.b1 PHD_FILE: MSMg01no383_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:56 2005
         (458 letters)



>mm_chr5_54594398_54595253
          Length = 856

 Score =  770 bits (398), Expect = 0.0
 Identities = 424/438 (96%), Gaps = 10/438 (2%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctaccttggacctgacaaagcttgtgctccggatcctcgggagaactggtactgttttct 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctaccttggacctgacaaagcttgtgctccggatcctcgggagaactggtactgttttct 793

                                                                       
Query: 81  catttgtattttccccaaggacctggcatctgcagtgttagcacagagtgaagcacggtg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 catttgtattttccccaaggacctggcatctgcagtgttagcacagagtgaagcacggtg 733

                                                                       
Query: 141 tgtggatgtagatagtccaaagagtcacttgtttttatctgtttgtttgtttgtttgttt 200
           |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 732 tgtggatgtagatagtccaaagagtcacttgtttttatc--------tgtttgtttgttt 681

                                                                       
Query: 201 gtttctgtctgtttgtttgtttgtctttatctgttgtttaggagtttaattgtgtgcctt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtttctgtctgtttgtttgtttgtctttatctgttgtttaggagtttaattgtgtgcctt 621

                                                                       
Query: 261 gtcccaggcttccaatcactgtcatactgaacattatcattacatgaaaacaggtaaata 320
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtcccaggcttccaatcacaggcatactgaacattatcattacatgaaaacaggtaaata 561

                                                                       
Query: 321 tagaaaacactcaacatctttttttgtgtgtgtgtgattaaaaaatgagggggcggaaga 380
           ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 tagaaaacactcaacatc--tttttgtgtgtgtgtgattaaaaaatgagggggcagaaga 503

                                                                       
Query: 381 aagggaaatgtcaagtcttgcctgaagcaagcacatacagggacatccattctgtacccg 440
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 aagggaaatgtcaagtcttgcctgaagcaagcacatacagggacatccattccgtacccg 443

                             
Query: 441 aggaagagttaaatgtcc 458
           ||||||||||||||||||
Sbjct: 442 aggaagagttaaatgtcc 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 856
Length adjustment: 10
Effective length of query: 448
Effective length of database: 846
Effective search space:   379008
Effective search space used:   379008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)