BAC Information

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BAC

Clone NameMSMg01-384G20
Chromosome5 (Build37)
Map Location 110,949,313 - 111,153,240
singlet/doubletdoublet
Overlap geneGalnt9, Noc4l, Ddx51, Ep400
Upstream geneLOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
Downstream genePus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G20.T7 (MSMg01no384_g20.b1)MSMg01-384G20.TJ (MSMg01no384_g20.g1)
ACCAG487866AG487867
length772776
length of high quality
(start - end)		478 (34 - 511)396 (62 - 457)
definitionCHROMAT_FILE: MSMg01no384_g20.b1 PHD_FILE: MSMg01no384_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005CHROMAT_FILE: MSMg01no384_g20.g1 PHD_FILE: MSMg01no384_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,949,313 - 110,949,632)(111,152,845 - 111,153,240)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGAGCC
ACAGAAGATCTGCTGTTCAGCACTGACAGAGACAACTCCTAGGGGACACA
CTAGTAAGATCTGCCAATTAGAGAGATTCAGAGCTAATGAGGGACCTGGA
AGTGGGCCACTCCCAGTAGCTGTACACCTGAGGGCCTTCTGCCCCTTGGG
TATACTCTGAAGCTAGGGGAAAGTCCTGTGGTGCTGAGAGTGAGAAGCTA
GGACAGCGGTCCCACTGTGTGCAGAAAGGAGACCTATGTAGATCTAACTG
TGTGGCATCAATAGTTAGGGCTCTGTGCAGGCCTGGGCCTTAGTGTGACT
TCTTTAATCAAAATAGTTTTCACCATCTGTGAGACAGGCCTGTTCCTCTG
GCACTTGCTGCTTGGAGGTGCCAGGTTCTCATGCAGCCCCCATTTCCTGA
CACTGGAAGTGATCTTTGATGGCCCTGACCCACAAAAGGTCAACCAGAGC
CCTGGGGGTCTCTGCACTTGGGACCAGAGAACTGCCAGACCATATAGCCA
CACCCCTAGTCACTTGGCTTGGGAGCCCCCCGTAGCTATTTATTTGTGGG
CATCCATTGGGTAACCATCCCCCCTCCATGGTGGGTTCACTCCTGGGGAA
CAAGGGTGTTCCTGTTTTCTTCTCGGGAAATTTTGCCCCTTGGTAAAAGA
CTGACAGAGCCCCCCATGGGTTTTCCCCCCCTTGGGGGTGTTACCTTCCG
GGGGAGAAAAAAAAAAAAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCTTTCTCACCTCTGTGAGTCTCCCTACCTATTCTTTT
GAGACTGAAGCAGAATTCCTTGACAATGGGGTTGTAAGATGTGTCTTGTT
CTTCCTGTCCAGTGGTTCTGCCCAGTAGTTCAGATTGTTGGGTATTGCTG
TTAACACCTTAACCCTATACACTGTTTCCACACATAAACATGTCATCAGT
TACTTGTTTATTCCAATAGTGCTGCTGTCGGTGGTGTTTGTACACAAACG
GCTCTATGTATGTCAGTGGTGGCACATGATTGGTCTGTAGAATCATACAG
TTGGCTCAAACATGTATTCTTGGTTTGCTAGAGTATATGTGGAGTTAACA
CAACTTCAACCCTCTGGCTTAGGAGTTGGACAGCCCTCCCTTGTAACTAT
GGCTACACCAAGAAGGTGAAGCCTTCAAGAGGCTTGAAGTGAGCAGATGG
GAGGAATGTACTTCTTAGACAGGTTCTCACCGGTTGATGTGGGTTTTCTA
AACCCTGTACTGTTTTCCTTATGTATGTTTTATGACTCTACAACTCTTTC
CCCGTTTTTGTGCCTTAAGTCCGATATTATTATTTCTCACACTACTTTTC
TCTGGTGTATTCTCCTTCGCCAACTGGTTTTTTTTCCCCCCTTGTTCATT
TTACTCTATTGTTTACAACTTTTTTACCTTGTATTTTTTTTACCACCTGT
TTTCCACCTTTCTTTCTTTGTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g20.b1 MSMg01no384_g20.b1 CHROMAT_FILE:
MSMg01no384_g20.b1 PHD_FILE: MSMg01no384_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:43 2005
         (478 letters)



>mm_chr5_110949281_110950158
          Length = 878

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggagccacagaagatctgctgttcagcactgacagagacaactcctagggga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33  ggaattctggagccacagaagatctgctgttcagcactgacagagacaactcctagggga 92

                                                                       
Query: 64  cacactagtaagatctgccaattagagagattcagagctaatgagggacctggaagtggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cacactagtaagatctgccaattagagagattcagagctaatgagggacctggaagtggg 152

                                                                       
Query: 124 ccactcccagtagctgtacacctgagggccttctgccccttgggtatactctgaagctag 183
           |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 153 ccactcccagtagctgcacacctgagggccttctgccccttcggtacactctgaagctag 212

                                                                       
Query: 184 gggaaagtcctgtggtgctgagagtgagaagctaggacagcggtcccactgtgtgcagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gggaaagtcctgtggtgctgagagtgagaagctaggacagcggtcccactgtgtgcagaa 272

                                                                       
Query: 244 aggagacctatgtagatctaactgtgtggcatcaatagttagggctctgtgcaggcctgg 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aggagacatatgtagatctaactgtgtggcatcaatagttagggctctgtgcaggcctgg 332

                               
Query: 304 gccttagtgtgacttcttta 323
           ||||||||||||||||||||
Sbjct: 333 gccttagtgtgacttcttta 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_g20.g1 MSMg01no384_g20.g1 CHROMAT_FILE:
MSMg01no384_g20.g1 PHD_FILE: MSMg01no384_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:43 2005
         (396 letters)



>mm_chr5_111152645_111153440
          Length = 796

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttctcacctctgtgagtctccctacctattcttttgagactgaagcagaattcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcctttctcacctctgtgagtctccctacctattcttttgagactgaagcagaattcctt 537

                                                                       
Query: 61  gacaatggggttgtaagatgtgtcttgttcttcctgtccagtggttctgcccagtagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gacaatggggttgtaagatgtgtcttgttcttcctgtccagtggttctgcccagtagttc 477

                                                                       
Query: 121 agattgttgggtattgctgttaacaccttaaccctatacactgtttccacacataaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agattgttgggtattgctgttaacaccttaaccctatacactgtttccacacataaacat 417

                                                                       
Query: 181 gtcatcagttacttgtttattccaatagtgctgctgtcggtggtgtttgtacacaaacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtcatcagttacttgtttattccaatagtgctgctgtcggtggtgtttgtacacaaacgg 357

                                                                       
Query: 241 ctctatgtatgtcagtggtggcacatgattggtctgtagaatcatacagttggctcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctctatgtatgtcagtggtggcacatgattggtctgtagaatcatacagttggctcaaac 297

                                                                       
Query: 301 atgtattcttggtttgctagagtatatgtggagttaacacaacttcaaccctctggctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgtattcttggtttgctagagtatatgtggagttaacacaacttcaaccctctggctta 237

                                               
Query: 361 ggagttggacagccctcccttgtaactatggctaca 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggagttggacagccctcccttgtaactatggctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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