BAC Information

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BAC

Clone NameMSMg01-384G24
Chromosome5 (Build37)
Map Location 96,643,588 - 96,832,609
singlet/doubletdoublet
Overlap geneMrpl1, Fras1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G24.T7 (MSMg01no384_g24.b1)MSMg01-384G24.TJ (MSMg01no384_g24.g1)
ACCAG487874AG487875
length771753
length of high quality
(start - end)		484 (35 - 518)431 (65 - 495)
definitionCHROMAT_FILE: MSMg01no384_g24.b1 PHD_FILE: MSMg01no384_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005CHROMAT_FILE: MSMg01no384_g24.g1 PHD_FILE: MSMg01no384_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,832,130 - 96,832,609)(96,643,588 - 96,644,018)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAAG
AGTAACAAGTAAATTAAATGTCCCAAACAAGACTTCCTGTATGGATGTAA
GAGGGAAGTCTAGTTTACAGGCACCATGGGGTATTCATTGACAATGAGGA
AGGAGAGACTTGACTTCTTCCCAGTATCCTGAAACCCCTTTATTGCACAT
TTCCAAGAGCCAGGAGGAAGAGGCAGAGCTATGTTAGCAGCAAGGCTGGA
ACCGATGAGAGCACCATCAGCTAATAATCCACTGCTCCTACACACTAAGT
GTATGGCTTTAACCTACTCTTCTCTGCCCTCACCATGGGAAAACGCTTTG
CCATGGAAACTGCATCAAGATATCTACTCATTCCGGAGGACTTGGAAAAA
TTGCCTGGCTCTATCCCTCTGAACTCAATGTGTTTTCAGACTGCATTGTG
GACTCCCTTCCCTTTCTGCTAGTCATTCATCAAAGGAAAATAAATGAAGC
ACAGAACTAAGTACCCAAGAAATGGTCTACACGAGTATATCAAAAGAAAC
ATAAACCATCCCATTTTCAGACATATTATCATCTCACCTACGGCCCCATT
TACTTCACTGCTTCCACCTTCCAACTACCAGGACAATGTTAGGAGCCCCT
ATTCATCATTAGGGCCCGAATTTCTATTTTCTAAAAAGAAGTTTATAATT
AAGGGAAAAGAATCCTCCTAAATCCTTCCGGTTTGTCGAAAAAAAGGGAG
CCGAACCCAACCTAGGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGAGTTCAGTTCTGAAACTATTTTTTTTCTGCTC
TTTAAATTATATTCTTTTCTTCAAAGTGCTCTTTATTTAGATGTTAAAGG
ATTACCAGGACTAGAATTATATATTGGAATTTCAGATTTCCAGTGTTCAT
TGTGTTAATGCAGAAACACACACACACTTATAAATGTTTCATGTAGAGTT
TCAGCATATGGAAATATAAAGGGATGAAATTGTTAAAAGCTGGTTTTATA
TGGAGTTAGAACTTGGTGTTTTTATCCATAGCCGGTGCTGCCGTTGACTG
AGGGAAGGGACTGACCGAAAGGCAGATGTTGGTACTTGGACTTAGGGCTT
ATGCCATCTGGTTATTGGGCAGGATGCTAACTGTTTTTTCCCCAAGGACA
TTGATGTTAATGAAGTGTAAAACAGACTGTCATCTTTCTCTGAGTGTCTT
TTTCCCTAATGGCACCATTTCTATAGTTAATAGAAATGGCGGAGGGAGTA
ATAATTATATGCCACGGACTATTGAATAAAAACGGTACAATTTACGGAAT
CCTTATGTGCTCCTCAAGGGTAATTATAATTCCCCCGTTCCGGGGCTGGG
TTTTTTATCCTTCCAAACTTTTGAATATCCGCTACGGGGTGGAGGTTTTT
CCCTGGGGGGAATAAAAGCCCCAAACCCTTTTTCCTCGGGTGGATATCCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g24.b1 MSMg01no384_g24.b1 CHROMAT_FILE:
MSMg01no384_g24.b1 PHD_FILE: MSMg01no384_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
         (484 letters)



>mm_chr5_96831926_96832809
          Length = 884

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaagagtaacaagtaaattaaatgtcccaaacaagacttcctgtatggatgt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattctcaaagagaaacaagtaaattaaatgtcccaaacaagacttcctgtatggatgt 625

                                                                       
Query: 65  aagagggaagtctagtttacaggcaccatggggtattcattgacaatgaggaaggagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagagggaagtctagtttacaggcaccatggggtattcattgacaatgaggaaggagaga 565

                                                                       
Query: 125 cttgacttcttcccagtatcctgaaacccctttattgcacatttccaagagccaggagga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 cttgacttcttcccagtatcctgaaacccctttattgcacatttccaagagccaggggga 505

                                                                       
Query: 185 agaggcagagctatgttagcagcaaggctggaaccgatgagagcaccatcagctaataat 244
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 504 agaggcagagctatgttagcagcaaggctggaactgatgagagcgccatcagctaataat 445

                                                                       
Query: 245 ccactgctcctacacactaagtgtatggctttaacctactcttctctgccctcaccatgg 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccactgctcctacacactaagtgaatggctttaacctactcttctctgccctcaccatgg 385

                                                                       
Query: 305 gaaaacgctttgccatggaaactgcatcaagatatctactcattccggaggacttggaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaaacgctttgccatggaaactgcatcaagatatctactcattccggaggacttggaaa 325

                                                                       
Query: 365 aattgcctggctctatccctctgaactcaatgtgttttcagactgcattgtggactccct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattgcctggctctatccctctgaactcaatgtgttttcagactgcattgtggactccct 265

                                                                       
Query: 425 tccctttctgctagtcattcatcaaaggaaaataaatgaagcacagaactaagtacccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccctttctgctagtcattcatcaaaggaaaataaatgaagcacagaactaagtacccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_g24.g1 MSMg01no384_g24.g1 CHROMAT_FILE:
MSMg01no384_g24.g1 PHD_FILE: MSMg01no384_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
         (431 letters)



>mm_chr5_96643388_96644218
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagttcagttctgaaactattttttttctgctctttaaattatattcttttcttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggagttcagttctgaaactattttttttctgctctttaaattatattcttttcttcaa 260

                                                                       
Query: 61  agtgctctttatttagatgttaaaggattaccaggactagaattatatattggaatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgctctttatttagatgttaaaggattaccaggactagaattatatattggaatttca 320

                                                                       
Query: 121 gatttccagtgttcattgtgttaatgcagaaacacacacacacttataaatgtttcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gatttccagtgttcattgtgttaatgcagaaacacacacacacttataaatgttttatgt 380

                                                                       
Query: 181 agagtttcagcatatggaaatataaagggatgaaattgttaaaagctggttttatatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtttcagcatatggaaatataaagggatgaaattgttaaaagctggttttatatgga 440

                                                                       
Query: 241 gttagaacttggtgtttttatccatagccggtgctgccgttgactgagggaagggactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagaacttggtgtttttatccatagccggtgctgccgttgactgagggaagggactga 500

                                                                       
Query: 301 ccgaaaggcagatgttggtacttggacttagggcttatgccatctggttattgggcagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgaaaggcagatgttggtacttggacttagggcttatgccatctggttattgggcagga 560

                                                                       
Query: 361 tgctaactgttttttccccaaggacattgatgttaatgaagtgtaaaacagactgtcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctaactgttttttccccaaggacattgatgttaatgaagtgtaaaacagactgtcatc 620

                      
Query: 421 tttctctgagt 431
           |||||||||||
Sbjct: 621 tttctctgagt 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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