XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTAT
TCATTCAGTCATTGGGTTCTGAACCCAGGTCCTTGTCCATGGTTGAGAAC
ATAGACAGGTCTGATGCTGGAGTTTTACATTCTACGGAAGCTTTCCAGAA
AAGCACAAAACATTTGTTACTAGACATATATTTTATCTCTATCTTTAGTC
CTTGGACTACAGGGATGATTTTAAAATCAGTTTTGAATAATTTAGCATTC
TGATTCAGTAAGACGTGAACTACGTTAAAAAGCTGGTAGAATTTTGGACA
GGCCCTAAGCACATTCATGCCACCCATTTCCATGTTAGATGCAAATATCA
GCAATCAGACAGACGGAAACACACGGGGAGCGGGGCAGGAGGGAGGACAC
TGCTTCTTACCTGATGTGCACTACTTCATCATGTTATGCGTGAAGAAACA
GTAGAAGTAAGAACATGAAGAATGTATATAAACAACATTTAAGATACTGG
ACACATTTATCACAACTTTAAAAATTAATAAAACCTTAGTCCTGCNCTAA
CACAGAGAAATCAGAACTCAGGCTTTCTCTGTGAGCATGAAAACCCCAAC
CATTTGGCACTGACAAAAGANGGGAATGAGATCTATAACGCCCAAAGAAT
ATAGGCCCAAAATGCGGTTAGTTAATAAAAAACAGGAAACGGGTTGTTCT
AAGCCGAGGAATTAATAAGGTTTGACAGGAGCACCAAAATTCTACGGCTG
GAAGGGAAAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTTTGTAGACCAGGCTGGCCTGGAACTCACAGAGATC
TGCCTGCCCCTCCCTCACGAGTGCTGGAATTAAAGGCATTTACCACCACT
GGTCTGGCACTACAGTCACTCTGGGGTTTTGTGGGATTTTCTATGCTGCC
TTATATTTATTTAGGGGGCTGGTTTATGTGTATATGTGTATACACTGTTC
CCACCATGCATGCCTTCTGTGTGGAGGACTTACAGGAGGCTGTACATTTT
CTCTTTCTGTCCTGAGGGTTTTAGGGATTGAACTCAGGTCAGGGCAGGCT
TGGTAGCAAGCCCCCTTTCCCCACTGAGCCAAGTCACCAGCCTTGTGGTT
TTTGTTCCCCTGTCATTTTTATGTGTTTTGCCCACACATATGTCTACACA
CCACTTGTGTACAGTGTCTGCGAAGGTCAGAAAGGGGTGTCAGGTCCCTT
TAACATCTAGAGGCATAGATGGGTATTAACCCCCATAAGGGGTGCTAGGT
CACCCGGAGAGAAGCCAGTTTTCTTCTTCTTTCCTACCCCCTGCCTTTGG
TTTTGAAAAGAATTTCTGGTACCATTCTTGGGCCCAAATTGGTCATGGTG
GAAATTTATCTTGAGCTTTGCCCCCCACCTTTTTACAAAGTGTTGGCAAC
AAATTTGATACACCCTTTTTTTTGGTTGGGGGGGTCATGGCTCTGTGCCT
CTCCCTC

Query= MSMg01no384_h24.b1 MSMg01no384_h24.b1 CHROMAT_FILE:
MSMg01no384_h24.b1 PHD_FILE: MSMg01no384_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:49 2005
         (501 letters)



>mm_chr5_108182325_108183227
          Length = 903

 Score =  930 bits (481), Expect = 0.0
 Identities = 494/499 (98%), Gaps = 2/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttattcattcagtcattgggttctgaacccaggtccttgtccatggttgaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttattcattcagtcattgggttctgaacccaggtccttgtccatggttgaga 264

                                                                       
Query: 65  acatagacaggtctgatgctggagttttacattctacggaagctttccagaaaagcacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatagacaggtctgatgctggagttttacattctacggaagctttccagaaaagcacaa 324

                                                                       
Query: 125 aacatttgttactagacatatattttatctctatctttagtccttggactacagggatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacatttgttactagacatatattttatctctatctttagtccttggactacagggatga 384

                                                                       
Query: 185 ttttaaaatcagttttgaataatttagcattctgattcagtaagacgtgaactacgttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaaaatcagttttgaataatttagcattctgattcagtaagacgtgaactacgttaa 444

                                                                       
Query: 245 aaagctggtagaattttggacaggccctaagcacattcatgccacccatttccatgttag 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 aaagctggtagaattttggacaggccctgagcacattcatgccacccatttccatgttag 504

                                                                       
Query: 305 atgcaaatatcagcaatcagacagacggaaacacacggggagcggggcaggagggaggac 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 atgcaaatatcagcaatcagacagacggaaacacacggggagcggggcaggagggagggc 564

                                                                       
Query: 365 actgcttcttacctgatgtgcactacttcatcatgttatgcgtgaagaaacag--tagaa 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 565 gctgcttcttacctgatgtgcactacttcatcatgttatgcgtgaagaaacagagtagaa 624

                                                                       
Query: 423 gtaagaacatgaagaatgtatataaacaacatttaagatactggacacatttatcacaac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtaagaacatgaagaatgtatataaacaacatttaagatactggacacatttatcacaac 684

                              
Query: 483 tttaaaaattaataaaacc 501
           |||||||||||||||||||
Sbjct: 685 tttaaaaattaataaaacc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space:   438463
Effective search space used:   438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)