BAC Information

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BAC

Clone NameMSMg01-384L19
Chromosome5 (Build37)
Map Location 5,989,372 - 5,989,748
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L19.T7 (MSMg01no384_l19.b1)MSMg01-384L19.TJ (MSMg01no384_l19.g1)
ACCAG488103AG488104
length764757
length of high quality
(start - end)		487 (33 - 519)452 (61 - 512)
definitionCHROMAT_FILE: MSMg01no384_l19.b1 PHD_FILE: MSMg01no384_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:06 2005CHROMAT_FILE: MSMg01no384_l19.g1 PHD_FILE: MSMg01no384_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGTGAC
TTTGCCATTGGGAGGCTCTGTTTAAATCACAGGTTGAAAGTAGAGGAAAA
GTTGCTGATGCTTTATTCTGCCCCTGGAATATAAAAACTCACTGAATGGG
CACTGGGGGTCGGGACCTCTCCTTTGGGTCTGGGATAACCCCTGTGCACT
GGAACAATAAATTCCTCTTGCTTTTTGCATCCATCCAGGCTCCACGTGGT
TCACTCAGGGGTCTCTGGTAAGCTAAGGCTTCCCAGAGTCTTACAGCAGA
AGCTGAACAAAGGTGAGGCTCTTGGTCTGGATGAGGCAGGAATGCTCAAG
TGCGCACAGTGCTGGCTGACATGGGAGGCTCGCTCACATCCCAGAAAGCA
TGGTGGTTTGGCAGAGCTGTGACTCCACCGGGATAGCTAGAGAAAGTTGC
AAGAATAATGAAGGACAATAGAAGGCATGCTTGCAGGCCAATTTGGTAGA
ATTATTTTGAGTATGTGGCCATTANAATGCAGATGTAAAAAGAGTTCTGG
CCTTGCCTTGTGTGCTGACGTTGAACGGTAAATGTGGCTCTCTTTCTTCT
CCAGCTGTCAAACTTTGAGACTCCCCATGTCTTAACCCCCTCAGGAGGCA
CCGGAAGGAACCACCTTACCCCCCTAAATCCCCTGGGTTTGTTTTGGTTT
TTACCCCCTTTTTTTAACTAAAAATTAGGTGCCCTAAAAACACAATGCCT
TCCCTGTTTTTTGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCTTCAGGAGAAATGACCTTCCTCAAGGAAGAACATAC
CAGTTGATTACCCAGTATCAAATGATTAGCCTTGAAGTCATACATATAAC
TAACATTATTTAAACTGAGTAGAGTGTATTTATATATTTAGGAGAGAGAG
AGAGAGTGTGTGTGTAAAACATCAATTAATGGAAAAGAGGTCATGAATTT
AAAAGAGAACAAGGAGAGTGTATAAGAAAGTTTGGAGGTAGAAAAGAGGA
GGGTGAAATGTAATGATATTATAATCTCTAAAAATCTAAGAAATACTTCT
ATTAGAAAAAATGGCCAAACTGAGAGGAAGATGGCAGCAGCCACTAGTAC
CCATGGGGCCTTGGGGCCAATCCTAAGAGCCTGAGAGACTCGTGGAAGCT
TTGAAGAGAGATGAGAGCTATGGGGGCGCAGCCTGCAGAGCATACAGTAT
CTCTAGAACAACTAAAAAAGGCAAGTCTTATGAGAACATGCTTTACCACG
TGGCTTTGAGGAACTTGGACAAAAGAAGGCATAGTACATGTGCACTTGTG
GGGACGAATTATACCCATACACCTCGCTCCTGTGGCACGGCCGTGCTTGA
TGCTTGTTCCGTTCCCTCACGGCCACCCTACTGCTGTCCCCGTAATTGCC
CCCTATTCTCCACAAACCGGTTGCATGTTTTTGTTCCCTTTTTCCCCTGC
CCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l19.g1 MSMg01no384_l19.g1 CHROMAT_FILE:
MSMg01no384_l19.g1 PHD_FILE: MSMg01no384_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:06 2005
         (452 letters)



>mm_chr5_5988897_5989748
          Length = 852

 Score =  702 bits (363), Expect = 0.0
 Identities = 373/377 (98%), Gaps = 2/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  tcatacatataactaacattatttaaactgagtagagtgtatttatatatttag--gaga 135
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||
Sbjct: 852 tcatacatataactaacattatttaaactgagtagggtgtatttatatatttaggagaga 793

                                                                       
Query: 136 gagagagagagtgtgtgtgtaaaacatcaattaatggaaaagaggtcatgaatttaaaag 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gagagagagagtgtgtgtgtaaaacatcaattaatggaaaagaggtcatgaatttaaaag 733

                                                                       
Query: 196 agaacaaggagagtgtataagaaagtttggaggtagaaaagaggagggtgaaatgtaatg 255
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 732 agaacaaggagagtgtataagaaagtttggaggtagaaaagaagagggtgaaatgtaatg 673

                                                                       
Query: 256 atattataatctctaaaaatctaagaaatacttctattagaaaaaatggccaaactgaga 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atattataatctctaaaaatctaagaaatacttctattagaaaaaatggccaaactgaga 613

                                                                       
Query: 316 ggaagatggcagcagccactagtacccatggggccttggggccaatcctaagagcctgag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaagatggcagcagccactagtacccatggggccttggggccaatcctaagagcctgag 553

                                                                       
Query: 376 agactcgtggaagctttgaagagagatgagagctatgggggcgcagcctgcagagcatac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agactcgtggaagctttgaagagagatgagagctatgggggcgcagcctgcagagcatac 493

                            
Query: 436 agtatctctagaacaac 452
           |||||||||||||||||
Sbjct: 492 agtatctctagaacaac 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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