BAC Information

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BAC

Clone NameMSMg01-385F12
Chromosome5 (Build37)
Map Location 31,749,439 - 31,749,927
singlet/doubletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385F12.T7 (MSMg01no385_f12.b1)MSMg01-385F12.TJ (MSMg01no385_f12.g1)
ACCAG488566AG488567
length730757
length of high quality
(start - end)		---514 (56 - 569)
definitionCHROMAT_FILE: MSMg01no385_f12.b1 PHD_FILE: MSMg01no385_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:53 2005CHROMAT_FILE: MSMg01no385_f12.g1 PHD_FILE: MSMg01no385_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACCACTCCTATTCCAANANATCCNCNNAATTCANNTCTTTCCACCCACA
TCTNNCTCTNTNACCACCNTAAATTCANTTCCAAAACCCTAACTTCTTCC
CCCTCTCTANCTACTTTCCCCCCAAACTTACTTTTAATAAATATATAAAA
ATCTTTTTTAAAANAAAAAAATAACTNNNCANTNCAACACACACTTCAAT
CACNCTTTCTNAAACAAACNTTTCTCTCTCTTATACCNNCCCCCCCCCCT
NNCCCTATAAANNAATTTCANTAAACCAANCCTACTTTAAAACCNNTNCT
TNNAAATTTTCCAATAANAAAACCAAAAAAAAAAATCTTTTCCCTTTCCC
CTCTTTTCCNNNNTTNAAAACCTTCNCCTCTTTATNTCTATAANCCCCTT
CCNTCTTTCTAAACCCCCTNCCTACTTTTTTTTTTCCCCCCNNCCCACTT
CCCNCCTAAACCCCTCCCNCTTTNTTCCCNAACCTCTTTTTATTNNAAAT
AAATTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATAAAA
AAAAAATTCTNNNNCNNNNNNNTATCTTCTTTNTCTCTCTACTACAAAAA
AAAAAANNCCTCTCCNNNNCCNCNNCNNCCTTCCCCCNNNNNTCCCCCCT
NTNCCTTCCATCTCCAAATAAAAAACTANNNNCCTACCCCATATCCTCNN
CTTTTTCCCCCTTTTTCTTTTTCATTTATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAACTCAGAGCAACAGTTGCCAGATGTGAAGTCCTCTGAGTTGGGC
TGGAAACAGGTACACTGTCTTTAGGGTTCAACTCTGGGCCACAGTTGCAG
GAGATAAAACCTTCTGTGGTGAGCACAGAGGTTAAGCTGCTAGAAGAGTC
ACCTCAGGAATTGAAGCATAAACCTAGATTGCAATTTAGGAAATCTTGTG
ACTGGAGTCACAGTAAAAATGTTATGGCACCCAACACCGAGATACAAGAT
GTAGAATTATCTGACTTGCACCCTAGTCCAGAACTTCAGGGTATAAAATC
TAAGGTGTTCTGTCCTAGGTTACACTTGGAAGATGTGATGCCTGCATGTA
CTCCCAATTTAAATTCTCAATAGGTAAATTCCAGTGAGTATATATCTGGG
CCATATTTTCAAGATACAAATTCCTCTACATGTATTCCAGAGACAAATGT
TCATTGTATAAGTTTTGAGTGCAATCCAGGAATACATTTGCATGGAACGA
ATACTTCCTCATGCTTTTCAGGATCAAAATAGCAAGTTTAGATTCATTTG
GGAGCAACACTGGATCATATTTGCCAGATGAAAATTCTACTGAATGCACT
CCAGGGTCAAGTCTTTACTGTGAAAAGCCTTCTGCTTGTTCTTCAAACCA
AAACCTCCCTTTGTAATTCCCCTGAACGCAATTCCTGAATTTATTTTGTA
ATTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_f12.g1 MSMg01no385_f12.g1 CHROMAT_FILE:
MSMg01no385_f12.g1 PHD_FILE: MSMg01no385_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:54 2005
         (514 letters)



>mm_chr5_31749235_31750148
          Length = 914

 Score =  520 bits (269), Expect = e-152
 Identities = 437/497 (87%), Gaps = 17/497 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   agagcaacagttgccagatgtgaagtcctctgagttggg-ctggaaacaggtacactgtc 64
           ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 205 agagcaacagttgccagatgtgaagccctctgagttgggcctgggaacaggtacactgtc 264

                                                                       
Query: 65  tttagggttcaactctgggccacagttgcaggagataaaaccttctgtggtgagcacaga 124
           |||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaagtttcaaccctgggccatagttgcaggagataaaaccttctgtggtgagcacaga 324

                                                                       
Query: 125 ggttaagctgctagaagagtcacctcaggaattgaagcataaacctagattgcaatttag 184
           ||| ||  |||| || |||||||||  |||||| |||||| |||||| |||||||| |||
Sbjct: 325 ggtcaaaatgctggaggagtcacctttggaattcaagcatgaacctatattgcaatgtag 384

                                                                       
Query: 185 gaaatcttgtgactggagtcacagtaaaaatgttatggcacccaaca-ccgagatacaag 243
           |||||| ||||||||||||||||||||||| ||||||  |||||| | ||||||||||||
Sbjct: 385 gaaatcctgtgactggagtcacagtaaaaacgttatgatacccaa-atccgagatacaag 443

                                                                       
Query: 244 atgtagaattatctgacttgcaccctagtccagaacttcagggtataaaatctaaggtgt 303
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtagaattatctgagttacaccctagtccagaacttcagggtataaaatctaaggtgt 503

                                                                       
Query: 304 tctgtcctaggttacacttggaagatgtg-atgcctgcatgtac-tcccaatttaaattc 361
           |||| ||| ||| ||||||||||||| || || | ||||| ||| ||| ||| |||||||
Sbjct: 504 tctgccctgggtcacacttggaagatatgtattc-tgcatctacctcc-aatataaattc 561

                                                                       
Query: 362 tcaataggtaaattccagtgagt-atatatctgggccatattttcaagatacaaattcct 420
           |||||| |||||||||||||||| | ||||||| ||||||||| ||||||||||||||||
Sbjct: 562 tcaatatgtaaattccagtgagtca-atatctgtgccatatttgcaagatacaaattcct 620

                                                                       
Query: 421 ctacatgtattccagagacaaatgttcatt----gtataagttttgagtgcaatccagga 476
           || |||| ||||||||  ||||    || |    ||||||| | ||||| |||||| |||
Sbjct: 621 ctgcatgcattccagatccaaa----cactcagcgtataaggtgtgagttcaatcctgga 676

                            
Query: 477 atacatttgcatggaac 493
           ||| |||||||||||||
Sbjct: 677 atatatttgcatggaac 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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