BAC Information

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BAC

Clone NameMSMg01-385I01
Chromosome5 (Build37)
Map Location 131,504,825 - 131,505,073
singlet/doubletsinglet
Overlap geneWbscr17
Upstream geneCrcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
Downstream geneAuts2, 4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I01.T7 (MSMg01no385_i01.b1)MSMg01-385I01.TJ (MSMg01no385_i01.g1)
ACCAG488688AG488689
length746789
length of high quality
(start - end)
249 (54 - 302)246 (61 - 306)
definitionCHROMAT_FILE: MSMg01no385_i01.b1 PHD_FILE: MSMg01no385_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:05 2005CHROMAT_FILE: MSMg01no385_i01.g1 PHD_FILE: MSMg01no385_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATACGACTCACTATATTCAGAGGATCCGCGGAATTCACAGGTTATTTTC
AAACAGGAATGATAGTTTATTTTTGCTTTTAAATGATTCGTGTACATGTG
TGGGGGTTTGTGCACATGAGTATAGCACCTACAGAGGCCAGAAGTGGAGG
TTGGCAACCCAACTCAGGTGTCCATGCACAGAAACACTACCATCTTTCCA
GACCTACTAGAAACACTGGTTTAAGAAAGTATACTGCAAGAGAGCACTGA
GCCAGACCGTGAGTCCCACCTACCCAGCTCAGGAGCGTGGACTCTGAGGG
TCTTTTATGTGAGAATGACTCATTGCTAGAGTGAGTTTTCTTTGTGTGCT
TTATATTCAGTTTTATCACGAGTAGGAGGGCAATCCGGGCAGGCAGGTAT
ACAGTTCTGGTAGGTTAGAGTGAGCCACTGGGCTGGTGCTTCCCAAGGGT
TCCATCTCTGCGATGCAAATATGGGCTCATGTGAATGAGGACCAGGAAAA
TAAGGGCAGCGCTGGTCACACGTGAGCTACGGTATTCCGTGTACAGCAGT
GTGTGGTTCTTCGACCGTGCTTGTGAATTTTTCCCAGTGATATCAGTTCT
ATGTGCATCCTACGTGTGTGCCTGTCTTGCGTTAATGTCTGTCTGTTCTC
CAGGTTTGTTTGTGTGTATATGTGGTCTCTATTTGTTATCCTTTTTTGCT
TATTTCTAGCCCTTCCTCTCTCTCTCGTATGTTTTCCCGTCTCCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTTCCTAGCATACATATTGGGTGGTGCACAGCCACCTAT
AACTCAGCACCAAGGGATCCAATACCCTCTTCTGGGGGTACCTGAACTCA
AGTGTGCACGCATGCACGCACACATACACACATGTGTGCACACACGTAGG
CATGGATAAAAGAAAGTTAAAAGGAGCAGAATGATCTTTTCATGGTAAGA
GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATATTTTTTTTTTTNNNNTTTTATTATTTTTTATTTTATATTTTT
TTTTTTTTCTTTTATGGTGGGGGGGGGGGTGGTTTTTTATTTATTTTTTA
TTTATTTTTATTATAATTTTTTATTGGTGTATTTAATAATTAAATTTTTT
TTGTGAGTATTTTTTTTGTTTTTTATTTGTTATTTATTTTTTTATTTTTT
TTAATATTGTTATGGATTTTTTATGTGAATTATTATTTTTTATTTTGTAT
TTTTTATAAAATTATTTTTATTTAAATAATAATTTTTTATATTTTTTTTT
ATATTTTTTTTATGATGTTTTTTTTTTTTTATTTTTTANTATGTTTTTTT
TTTTTTTTTTTATCTTTTAACCACTTTTGAATCCCATATTCCCTTTTTCT
TATTTCCTCCTTCTCTCCCTCTATTCATCTTCTTTTTTTTTTTTGTTTTC
CTCACTTGTTGTTTTTACTCCTCTCTCTTTCTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i01.b1 MSMg01no385_i01.b1 CHROMAT_FILE:
MSMg01no385_i01.b1 PHD_FILE: MSMg01no385_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:05 2005
         (249 letters)



>mm_chr5_131504625_131505273
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaatgatagtttatttttgcttttaaatgattcgtgtacatgtgtgggggtttgtgc 60
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 449 caggaatgatagtttattttttcttttaaatgatccgtgtacatgtgtgggggtttgtgc 390

                                                                       
Query: 61  acatgagtatagcacctacagaggccagaagtggaggttggcaacccaactcaggtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acatgagtatagcacctacagaggccagaagtggaggttggcaacccaactcaggtgtcc 330

                                                                       
Query: 121 atgcacagaaacactaccatctttccagacctactagaaacactggtttaagaaagtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgcacagaaacactaccatctttccagacctactagaaacactggtttaagaaagtata 270

                                                                       
Query: 181 ctgcaagagagcactgagccagaccgtgagtcccacctacccagctcaggagcgtggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgcaagagagcactgagccagaccgtgagtcccacctacccagctcaggagcgtggact 210

                    
Query: 241 ctgagggtc 249
           |||||||||
Sbjct: 209 ctgagggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)