Query= MSMg01no385_m05.b1 MSMg01no385_m05.b1 CHROMAT_FILE:
MSMg01no385_m05.b1 PHD_FILE: MSMg01no385_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:25 2005
(426 letters)
>mm_chr5_132475936_132476761
Length = 826
Score = 727 bits (376), Expect = 0.0
Identities = 410/422 (97%), Gaps = 2/422 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggtagtctcaataacatatgtatggaggagggttgactgcatatcatcccat 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggtaggctaaataacatatgtatggaggagggttgactgcatatcatcccat 264
Query: 65 gttctcaggagccacaacgaggcactggatccccgggagttagagttgcaggtggctgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctcaggagccacaacgaggcactggatccccgggagttagagttgcaggtggctgtg 324
Query: 125 gtgctgggatccacacaagggtactctgcaaggcagcaagcactcagttactgagttctc 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gtgctgggatccacacaagggtactctgcaaggcagcaagcactcaattactgagttctc 384
Query: 185 tctccagccccggttctcatatccatacgacagtcagaatcacagatacaaatgcatgag 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctccaaccccggttctcatatccatacgacagtcagaatcacagatacaaatgcatgag 444
Query: 245 caggaaccttcccaaggcagagagagaagcaactgtaggtcacagcatggtggtagctca 304
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 445 caggaaccttcccaaggcagagagagaagcaaccgcaggtcacagcatggtggtagctca 504
Query: 305 cctgcttataaaaacaaccagtatctgttggccatgagctctatagcaccccctgccccc 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgcttataaaaacaacccgtatctgttggccatgagctctatagcaccccctgccccc 564
Query: 365 aaaatgactcatgtgaggtatcaaacacacacacacaca--gacacacacacacacacac 422
|| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct: 565 aatatgactcatgtgaggtatcaaacacacacacacacacagacacagacacacacagac 624
Query: 423 ac 424
||
Sbjct: 625 ac 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_m05.g1 MSMg01no385_m05.g1 CHROMAT_FILE:
MSMg01no385_m05.g1 PHD_FILE: MSMg01no385_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:25 2005
(474 letters)
>mm_chr5_132621812_132622685
Length = 874
Score = 880 bits (455), Expect = 0.0
Identities = 470/475 (98%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 1 ctagctgactggtcagagagggggctgcgaaaagcccttttccttgtccttaaaaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ctagctgactggtcagagagggggctgcgaaaagcccttttccttgtccttaaaaaagag 795
Query: 61 ctcattagcatacaccacctgtatgtcatgagtttcattctgtaatgtgctgtgctcaca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 794 ctcattagcatacaccacctgtatgtaatgagtttcattctgtaatgtgctttgctcaca 735
Query: 121 gtcactcctgttgtcctgtcttcttcccctccccttcctgccaattcccttcatcttttc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 734 gtcactcctgttgtcctgtcttcttcccctccccttcctgccgattcccttcatcttttc 675
Query: 181 ctctaccaccccctcctttccattttcttttgttctttgtttttgtgtcccaatgagttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttctaccaccccctcctttccattttcttttgttctttgtttttgtgtcccaatgagttt 615
Query: 241 ccttatggtt-gctgacaggagcatgcatgaggggtacagagggagcctacaagtgccta 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccttatggttggctgacaggagcatgcatgaggggtacagagggagcctacaagtgccta 555
Query: 300 caccatggaagacaatcttttccttctctagcaaccatcaacaatctatagatcctgggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caccatggaagacaatcttttccttctctagcaaccatcaacaatctatagatcctgggg 495
Query: 360 gaggagcaggccttgtgagccctctgccctagcagccattaaccttacatagatcttcag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaggagcaggccttgtgagccctctgccctagcagccattaaccttacatagatcttcag 435
Query: 420 ggaggggcaggaccttgagaggctctgctcccagcaaccattgagtgtattagac 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaggggcaggaccttgagaggctctgctcccagcaaccattgagtgtattagac 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
