BAC Information

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BAC

Clone NameMSMg01-385N19
Chromosome5 (Build37)
Map Location 26,752,766 - 26,753,142
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385N19.T7 (MSMg01no385_n19.b1)MSMg01-385N19.TJ (MSMg01no385_n19.g1)
ACCAG488963AG488964
length738769
length of high quality
(start - end)		523 (38 - 560)67 (65 - 131)
definitionCHROMAT_FILE: MSMg01no385_n19.b1 PHD_FILE: MSMg01no385_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005CHROMAT_FILE: MSMg01no385_n19.g1 PHD_FILE: MSMg01no385_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
ATTTCCTGTGGAACAGTGTAAGAATTAAGGCTCATATAGTATTCCTAGCA
TGACCCGTGTGGTGCTTTTCTTGGGCCACTGATTGCACTGACTCTCTGGG
ACCATGTTTGGCCACCCTTTCTCCTCTGACCTGTAGTCGCTGACCTGACT
CCTGCACTGCCCCTTCTTACACGCGTTTGCGCGACCGGCCAGGAAAGACG
CAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAG
GAGCAAGAGCGCAAGAGAGAGAATGGCGAAACACCGTCCCTTTTAAGGAG
AATTATCCTCCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATT
GGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACTAC
CCTTGGCACATGCACAGATTATTTGTTTACCACTTAGAACACAGGATGTC
AGTGCCATCTTGTAACGGCAAATGTGAGGGTGGCTCCCCACAGCCCCTTC
ATTTGCATTTACAGCAAGGTGTTGGTATTGCAGGCTGCCAGTCAAGTCTT
GGGTATGTTTCTAAACATACATTCATATCAACTTTATAATCATCTTAAAA
ATTCTAGAAAATATTGCTGCTGGGATTCCACCTCTGAATACATAAATCCT
TGGGGCAATTTGGGTGAATTCTAATTTTAACAAAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCATAATCATCAGGGAAATGCAAATCANAACAAC
CCTGAGATTCACTCCNNCAGTTATGGNTNCTGNACNTACNCATTTGGCTC
GGNATGTGTGGAGCCNNNNNTNNNNNNNNNNCACNNNNNNANNANNNNNC
TCTTGGATGTGACTGACCGGGTCATGAACCAGCCAACCCGGTAAACCTGG
AAGTTCTTTTCTTTTATCGGGGACGCGCCAAGGAAAGGCCNNGGNNNNNN
NNNTNNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCGCCCCCCNNNCNNNCANACCCCCCCCCCCCCACCCACATAA
AAACAATTTAAAAACNAAATTTTNNNGCNCTCCCGGCGCCCNCCCCCTTC
TCTTTTCTATTATTTTTTTTTCTTCCCCCTANTNATTATNAACCAATTCA
CCCTATATCTCCCCTCTCCTTCCCATCTACACCATACTANACAAAACCAC
CCACCCCCCCCACCCCCCCCCCCTACTCTCTATTCTCNCTTTTTCTAANA
TCTTAAAAAATAATCATTCCCTCTCCTCCCCTTCCCCCCCCCCNNCTCCC
TTTTTCTCCCCCAANCACCCAATCTCCCATCTCTTTTCCTCTTTTCCTCT
TTTTTTTTGTTTCGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_n19.b1 MSMg01no385_n19.b1 CHROMAT_FILE:
MSMg01no385_n19.b1 PHD_FILE: MSMg01no385_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:33 2005
         (523 letters)



>mm_chr5_26752766_26753688
          Length = 923

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcatttcctgtggaacagtgtaagaattaaggctcatatagtattcctagcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaattcatcatttcctgtggaacagtgtaagaattaaggctcatatagtattcctagcat 318

                                                                       
Query: 65  gacccgtgtggtgcttttcttgggccactgattgcactgactctctgggaccatgtttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gacccgtgtggtgcttttcttgggccactgattgcactgactctctgggaccatgtttgg 258

                                                                       
Query: 125 ccaccctttctcctctgacctgtagtcgctgacctgactcctgcactgccccttcttaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccaccctttctcctctgacctgtagtcgctgacctgactcctgcactgccccttcttaca 198

                                                                       
Query: 185 cgcgtttgcgcgaccggccaggaaagacgcaacaaaccggaatcttctgcggcaaaagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cgcgtttgcgcgaccggccaggaaagacgcaacaaaccggaatcttctgcggcaaaagct 138

                                                                       
Query: 245 ttattgcttacatcttcaggagcaagagcgcaagagagagaatggcgaaacaccgtccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttattgcttacatcttcaggagcaagagcgcaagagagagaatggcgaaacaccgtccct 78

                                                                       
Query: 305 tttaaggagaattatcctccgcctaggacgtgtcactccctgattggctgcagcccattg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 77  tttaaggagaattatcctccgcctaggacgtgtcactccctgattggctgcagcccatcg 18

                            
Query: 365 gccgagttgtcgtcacg 381
           |||||||||||||||||
Sbjct: 17  gccgagttgtcgtcacg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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