Query= MSMg01no386_h18.b1 MSMg01no386_h18.b1 CHROMAT_FILE:
MSMg01no386_h18.b1 PHD_FILE: MSMg01no386_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:18 2005
(280 letters)
>mm_chr5_64969372_64970052
Length = 681
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 tagggtccttgctcatggatatctgggggcatctactcactgaaaaggccaatggaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggtccttgctcatggatatctgggggcatctactcactgaaaaggccaatggaaaac 260
Query: 61 cagaaaattgtatcagttaaagtaggcaagggattcaactcatcaccaccgtttcctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaaattgtatcagttaaagtaggcaagggattcaactcatcaccaccgtttcctttt 320
Query: 121 ttctccaatttagattttccttctcagtctcatcttaaggtctatctgatcttgttacag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttctccaatttagattttccttctcagtctcaccttaaggtctatctgatcttgttacag 380
Query: 181 ccaggcttaatggccgtaggagtctaagacccagctacatatttt-ccccatcacgtaac 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ccaggcttaatggccgtaggagtctaagacccagctacatatttttccccatcacgtaac 440
Query: 240 aacattcttgagaggcggaggaggctgaggagatggttgca 280
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacattcttgagaggcggaggaggctgaggagatggttgca 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space: 182112
Effective search space used: 182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_h18.g1 MSMg01no386_h18.g1 CHROMAT_FILE:
MSMg01no386_h18.g1 PHD_FILE: MSMg01no386_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:18 2005
(591 letters)
>mm_chr5_65146105_65147095
Length = 991
Score = 818 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Minus
Query: 1 tgggagagaggcaggcagaagggatttgccacaatgctgatagagagatggaactaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgggagagaggcaggcagaagggatttgccacaatgctgatagagagatggaactaagga 364
Query: 61 gagataaccaaccatatggcagcatatagaataaccaggttaattaagttacaagctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagataaccaaccatatggcagcatatagaataaccaggttaattaagttacaagctagc 304
Query: 121 aggaacaagccaaatctttaggcccagatattcatttataaataattcagtttcaaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggaacaagccaaatctttaggcccagatattcatttataaataattcagtttcaaagtc 244
Query: 181 attattttgggaacttgggcatgggcagtaaagtccacagttacaggtctgccatgtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attattttgggaacttgggcatgggcagtaaagtccacagttacaggtctgccatgtcaa 184
Query: 241 taccccacttctggtaccaatttctgtctttgtcagggttattatttcagtgataaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taccccacttctggtaccaatttctgtctttgtcagggttattatttcagtgataaaaca 124
Query: 301 ccatgatcaaaaaagcaagttgagcaagagatggtttatttttcttatacttccatatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ccatgatcaaaaaagcaagttgagcaagagatggtttatttttcttatacttccatatca 64
Query: 361 cttgttcatcttatgaggttccttcctttcagatgactttagctcgtgtcaggttgacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cttgttcatcttatgaggttccttcctttcagatgactttagctcgtgtcaggttgacat 4
Query: 421 aaa 423
|||
Sbjct: 3 aaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
