Query= MSMg01no386_j01.b1 MSMg01no386_j01.b1 CHROMAT_FILE:
MSMg01no386_j01.b1 PHD_FILE: MSMg01no386_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:24 2005
(599 letters)
>mm_chr5_60567969_60568967
Length = 999
Score = 1100 bits (569), Expect = 0.0
Identities = 591/599 (98%), Gaps = 2/599 (0%)
Strand = Plus / Plus
Query: 1 aaattattctattacaggaattcctcatttatgtattccagaaaacataatggaaatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aaattattctattacaggaattcctcatttatgtattccagaaaacataatggaagtgag 260
Query: 61 aaatagaaaggaattttcatattattcatctcctttaacatgagtaagacttcagtgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatagaaaggaattttcatattattcatctcctttaacatgagtaagacttcagtgttc 320
Query: 121 agagatgatgttgtgcactgtggattcagatgctcatttctatgcccagatatctggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatgatgttgtgcactgtggattcagatgctcatttctatgcccagatatctggttg 380
Query: 181 caatctggactatggcatggtcaagcatctctggccttaatgctatgtaaaaaaaaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 caatctggactatggcatggtcaagcatctctggccttaatgctatgt--aaaaaaaaat 438
Query: 241 ctctgacattttattgtttaagaaagaagctgatcaggcaataagctgggcagaagaaga 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 ctctgacattttactgtttaagaaagaagctgatcaggcaataagctgggcagaagagga 498
Query: 301 taggacgtcttattccaatctgagggtgccaagaaaggagagaggggaggagaggaagaa 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taggacttcttattccaatctgagggtgccaagaaaggagagaggggaggagaggaagaa 558
Query: 361 gttctggagagatggtttggatggaccaagaggatgtgccatacgtttgtgatgaaagaa 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 gttctggagagatggtttggatggaccaagaagatgtgccatacgtttgtgatgaaagaa 618
Query: 421 aagccctgaggacacacatggaccagagcaaaccagagcaagactcagatgcaggtaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagccctgaggacacacatggaccagagcaaaccagagcaagactcagatgcaggtaaag 678
Query: 481 aaacacattatgggaggtaagcattcacacagggttagaatagctcagaacctgccaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaacacattatgggaggtaagcattcacacagggttagaatagctcagaacctgccaaat 738
Query: 541 taacagccaacatcctgttaataaaaataccaggtctttgtttcatttgggagagctaa 599
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttacagccaacatcctgttaataaaaataccaggtctttgtttcatttgggagagctaa 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_j01.g1 MSMg01no386_j01.g1 CHROMAT_FILE:
MSMg01no386_j01.g1 PHD_FILE: MSMg01no386_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:24 2005
(613 letters)
>mm_chr5_60717150_60718162
Length = 1013
Score = 946 bits (489), Expect = 0.0
Identities = 553/613 (90%), Gaps = 60/613 (9%)
Strand = Plus / Minus
Query: 1 attagtttataaataaattacatcctcaaatttctgcataaactaatatgcagtcattcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attagtttataaataaattacatcctcaaatttctgcataaactaatatgcagtcattcg 518
Query: 61 cttacatccctttgagtttctgagtgttcgtccaggttttgttaattgctaatcagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttacatccctttgagtttctgagtgttcgtccaggttttgttaattgctaatcagaaat 458
Query: 121 agcaacaggaagctcattgtcttgtgttcaacaggaggcaagagtgaagtgaatctctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agcaacaggaagctcattgtcttgtgttcaacaggaggcaagagtgaagtgaatctctta 398
Query: 181 ggacaagagggctgtttccctgctttatctcgcctcttccgcttgcctgtctttcacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggacaagagggctgtttccctgctttatctcgcctcttccgcttgcctgtctttcacata 338
Query: 241 tataagcaacactccacataacagagtgatgctttacaaagttcacatttccttaactta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tataagcaacactccacataacagagtgatgctttacaaagttcacatttccttaactta 278
Query: 301 tgcagaaacatgagcatagcatctctaacttgcctgaaatggatatgtttccaaggaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgcagaaacatgagcatagcatctctaacttgcctgaaatggatatgtttccaaggaact 218
Query: 361 cagctccacgttgctatttttcttttcttttcttttcttttcttttcttttcttttcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cagctccacgttgctatttttcttttcttttcttttcttttcttttcttttcttttcttt 158
Query: 421 tcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttt 480
|||||||||||||||||||||
Sbjct: 157 tcttttcttttcttttctttt--------------------------------------- 137
Query: 481 tcttttcttttcttttcttttttattagatattttctttatatacatttcaaatgctatc 540
||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 --------------------tttattagatattttctttatatacatttcaaatgctatc 97
Query: 541 tcgaaagttccctacaccccccccccgactcccctacccacccactcctgcttcttggcc 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 96 tcgaaagttccctacaccccccccc-gactcccctacccacccactcctgcttcttggcc 38
Query: 601 ctggcattcccgt 613
|||||||||||||
Sbjct: 37 ctggcattcccgt 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
