BAC Information

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BAC

Clone NameMSMg01-386K06
Chromosome5 (Build37)
Map Location 4,180,841 - 4,181,401
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386K06.T7 (MSMg01no386_k06.b1)MSMg01-386K06.TJ (MSMg01no386_k06.g1)
ACCAG489561AG489562
length724735
length of high quality
(start - end)
582 (71 - 652)582 (72 - 653)
definitionCHROMAT_FILE: MSMg01no386_k06.b1 PHD_FILE: MSMg01no386_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:29 2005CHROMAT_FILE: MSMg01no386_k06.g1 PHD_FILE: MSMg01no386_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATCCGCGG
AATTCTGGATTATTACCTTTGAGGTGGGTGGGTGGCCCAATCCTTCATCC
GGGGGCAGTGCCTATCCACAGGATATGGTTCTATCTCACAGGTTCTATCT
CACCTTTGTTGGATAATTTGGCTATTCTCTTCTCTGTTGGGTCCTGGGAC
ATTTTTCTGATCTTATTCAGAGAATAAATCATGTTTTCGAGAGATCTTCT
CACGATACCTGTCATGTGTCCAAGCCTGGTGACCTGCTTTCGTGCTCAGA
ATGCACACGGTGAAGGGAGAGAATATCTTCCCCAAAGGTACCCGCAGCAC
CCCACGCACCCAGAACCATATAGGCACGCAAAACAAATAAATAAGTGTGA
TTAAAAAATAACTCTAAAACTCTATTTGGTCCAAGAGTTCTCACATAAAG
GATAAAATCAAATTCGTTCTTGAGACACAAGAGTCAACCTGTGACTTAGT
CACTGACTATTTATCATTGTGTTCTGTAACATCCCACATTACCCAGGGTC
CCATCTTCCAGCCACAGTGAACCACTTGTTCTTTGATGGACACAGGTCTT
CTATCCACTTCCCAACACTCAGCCTCTGACTTTACTATGAACAATCCTGC
TCAGGAGGTCCAGCCTGCATTCTCCTCTGANAGTACTCACTGACCACACG
GTACAGGTCAGCATTTTTTCTCAA
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTATTTCAGGAATTCTCACCAGAGGAAAGGCTGAGAAACAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCCTGTACAACCACTCTGGAAATCAATTTG
CAGGTCCTCAGAAAATTGGACATATTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAATGACACAT
GCTCCACTATGTTCATAGCACCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATAGACCTGGAGGGCATCATCCTGAGTGAGGTAACC
CAATCACAAAAGAATTCAAATGAAATGTACTCACTGATAAGTGGATATTA
GCCCAGAAACTTAGTATAGCGAGATATAAGGTACAAGATGCAAAACACTT
GAAACTGAAGAAGAACGAAGACCAAAGTGTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_k06.b1 MSMg01no386_k06.b1 CHROMAT_FILE:
MSMg01no386_k06.b1 PHD_FILE: MSMg01no386_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:29 2005
         (582 letters)



>mm_chr5_4180619_4181601
          Length = 983

 Score =  822 bits (425), Expect = 0.0
 Identities = 535/583 (91%), Gaps = 23/583 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggtgggtgggtggcccaatccttcatccgggggcagtgcctatccacaggatatggtt 60
           ||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct: 223 gaggt-ggtgggtggcccaatccttcatccaggggcagtgcctatccactggatatgg-t 280

                                                                       
Query: 61  ctatctcacaggttctatctcacctttgttggataatttggctattctcttctctgttgg 120
           |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 c--tct-acaggttctatctcacctttgttggataatttggctattctcttctctgttgg 337

                                                                       
Query: 121 gtcctgggacatttttctgatcttattcagagaataaatcatgttttcgagagatcttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 338 gtcctgggacatttttctgatcttattcagagaataaatcatgttttcgagagatcgtct 397

                                                                       
Query: 181 cacgatacctgtcatgtgtccaagcctggtgacctgctttcgtgctcagaatgcacacgg 240
           |||||||                 ||||||||||||||||| ||||||||||||||| ||
Sbjct: 398 cacgata-----------------cctggtgacctgctttcatgctcagaatgcacaggg 440

                                                                       
Query: 241 tgaagggagagaatatcttccccaaaggtacccgcagcaccccacgcacccagaaccata 300
           | |||| |||||| | | |||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 441 taaaggaagagaacagcctccccataggtatccacagcaccccacgcacccagaaccata 500

                                                                       
Query: 301 taggcacgcaaaacaaataaataagtgtgatt-aaaaaataactctaaaactctatttgg 359
           |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 501 taggcatgcaaaacaaataaataagtgtgattaaaaaaataactctaaaattctatttgg 560

                                                                       
Query: 360 tccaagagttctcacataaaggataaaatcaaattcgttcttgagacacaagagtcaacc 419
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tccaagagttctcacataaaggataaaatcaaatttgttcttgagacacaagagtcaacc 620

                                                                       
Query: 420 tgtgacttagtcactgactatttatcattgtgttctgtaacatcccacattacccagggt 479
           |||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||||||| 
Sbjct: 621 tgtgacatagtcactgtctatttaccattgcattctgtaacatcccacattacccagggg 680

                                                                       
Query: 480 cccatcttccagccacagtgaaccacttgttctttgatggacacaggtcttctatccact 539
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 cccatcttccagccacagtgaaccacttgatctttgatggacacaggtcttctatccact 740

                                                      
Query: 540 tcccaacactcagcctctgactttactatgaacaatcctgctc 582
           ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 741 tcccaactctcagcctctgactttactatgaacagtcctgctc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)