BAC Information

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BAC

Clone NameMSMg01-386K20
Chromosome5 (Build37)
Map Location 74,632,975 - 74,633,607
singlet/doubletsinglet
Overlap genenone
Upstream geneFryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386K20.T7 (MSMg01no386_k20.b1)MSMg01-386K20.TJ (MSMg01no386_k20.g1)
ACCAG489589AG489590
length762754
length of high quality
(start - end)
660 (74 - 733)633 (68 - 700)
definitionCHROMAT_FILE: MSMg01no386_k20.b1 PHD_FILE: MSMg01no386_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:32 2005CHROMAT_FILE: MSMg01no386_k20.g1 PHD_FILE: MSMg01no386_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCGCGGA
ATTCTTTGTTCATTTCTGAAACCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTATCTCTTTATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAC
AGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTT
TCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAG
ATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAAC
TCCTAAACCTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGAAATATACACTGACAGTTTCCAGAAGGTCTGATGGCAAGATG
GAGGGAGATGGCAGCGCCACACCTCACATGCCAACTCATCACCTGTCATG
TGACCCCTCTGAGGTCATAGGTGCAGGCTTGCCTGCAGAGCATGAGGACA
GTGACACACAGGCTTAGGTACTCCTGTGAGTAGGCACTGCTATGGCCTCA
CCATGGTGACACAGTCATTCAGGCCTCACCTGCAGGCTATAGCACACCAC
CACCATTTCATTTCTGTGTTAGCACATGGCTATAGTGCATTTGACTGTAT
GGATATACTACAATTCATGTGTCTGCTCAGGTGCCCAGATTATCAAAGGC
AGTTTCCCAGTTGGCAGGCATCTGGGCCGTTCCTGTCTCTCAGTTATCAT
GATGATGCTGGTAGTCTTGCAGCTACATGTTTTCATGTGGACATGCACTT
TCGTTCCTCTGAAGAATGCCAGGTCCACACTGCTTTCCTGAGGACTTTAC
ATCCCCACCAACACCCGAGGGTTTCAGTTCCTCCACATCTTTGTCGACAT
TTACTAATATTGATTTTCTTAACCTTAGCTGTGCTAATGCCTATGAAATA
AGGGGATACTTGTCAAGGCTGACAATCAAGGAAATCATCCTAGGGAGGGA
GAGGGAGAGTTAAACAAGTCTAGACCAGACGGGGATATATCCAGCATACA
CAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_k20.g1 MSMg01no386_k20.g1 CHROMAT_FILE:
MSMg01no386_k20.g1 PHD_FILE: MSMg01no386_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:32 2005
         (633 letters)



>mm_chr5_74632775_74633807
          Length = 1033

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacagtttccagaaggtctgatggcaagatggagggagatggcagcgccacacctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacagtttccagaaggtctgatggcaagatggagggagatggcagcgccacacctcac 260

                                                                       
Query: 61  atgccaactcatcacctgtcatgtgacccctctgaggtcataggtgcaggcttgcctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccaactcatcacctgtcatgtgacccctctgaggtcataggtgcaggcttgcctgca 320

                                                                       
Query: 121 gagcatgaggacagtgacacacaggcttaggtactcctgtgagtaggcactgctatggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcatgaggacagtgacacacaggcttaggtactcctgtgagtaggcactgctatggcc 380

                                                                       
Query: 181 tcaccatggtgacacagtcattcaggcctcacctgcaggctatagcacaccaccaccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaccatggtgacacagtcattcaggcctcacctgcaggctatagcacaccaccaccatt 440

                                                                       
Query: 241 tcatttctgtgttagcacatggctatagtgcatttgactgtatggatatactacaattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttctgtgttagcacatggctatagtgcatttgactgtatggatatactacaattca 500

                                                                       
Query: 301 tgtgtctgctcaggtgcccagattatcaaaggcagtttcccagttggcaggcatctgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtctgctcaggtgcccagattatcaaaggcagtttcccagttggcaggcatctgggc 560

                                                                       
Query: 361 cgttcctgtctctcagttatcatgatgatgctggtagtcttgcagctacatgttttcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgttcctgtctctcagttatcatgatgatgctggtagtcttgcagctacatgttttcatg 620

                                                                       
Query: 421 tggacatgcactttcgttcctctgaagaatgccaggtccacactgctttcctgaggactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggacatgcactttcgttcctctgaagaatgccaggtccacactgctttcctgaggactt 680

                                                                       
Query: 481 tacatccccaccaacacccgagggtttcagttcctccacatctttgtcgacatttactaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacatccccaccaacacccgagggtttcagttcctccacatctttgtcgacatttactaa 740

                                                                       
Query: 541 tattgattttcttaaccttagctgtgctaatgcctatgaaataaggggatacttgtcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattgattttcttaaccttagctgtgctaatgcctatgaaataaggggatacttgtcaag 800

                                            
Query: 601 gctgacaatcaaggaaatcatcctagggaggga 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 gctgacaatcaaggaaatcatcctagggaggga 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)