Query= MSMg01no386_p14.b1 MSMg01no386_p14.b1 CHROMAT_FILE:
MSMg01no386_p14.b1 PHD_FILE: MSMg01no386_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:53 2005
(420 letters)
>mm_chr5_41909033_41909852
Length = 820
Score = 687 bits (355), Expect = 0.0
Identities = 367/371 (98%), Gaps = 1/371 (0%)
Strand = Plus / Minus
Query: 1 gtcagtgacagtgggttaaaggattgcttaaaacctgtcataataaggaatttttgatgg 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 371 gtcagtgacagtgggttaaagggttgcttaaaacctgtcataataaggaattcttgatgg 312
Query: 61 aaaattgattatgaggaaattaggatggaaatgagtaaaagtagcaatcaaaataagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaattgattatgaggaaattaggatggaaatgagtaaaagtagcaatcaaaataagaca 252
Query: 121 agagtcaaacagagcaaagaataccgagataaaataatgctgggttgggcatcagggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagtcaaacagagcaaagaataccgagataaaataatgctgggttgggcatcagggaaa 192
Query: 181 atggcagaataaggacatgggacttttatctcttccacttttttttttaaa-caagaatt 239
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 191 atggcagaataaggacatgggacttttatctcttccactttttttttaaaaacaagaatt 132
Query: 240 gtaatactgtgggtcagaatcaactctttcaacgctgtagaaattaaccaaaggcttgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtaatactgtgggtcagaatcaactctttcaacgctgtagaaattaaccaaaggcttgga 72
Query: 300 aaaatacaggcaacatccttctttaatgaaagaatactcagaagaaaagttgttatagtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aaaatacaggcaacatccttctttaatgaaagaatactcagaagaaaagttgttatagtc 12
Query: 360 tacttttaatt 370
|||||||||||
Sbjct: 11 tacttttaatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_p14.g1 MSMg01no386_p14.g1 CHROMAT_FILE:
MSMg01no386_p14.g1 PHD_FILE: MSMg01no386_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:53 2005
(617 letters)
>mm_chr5_41724995_41726011
Length = 1017
Score = 1139 bits (589), Expect = 0.0
Identities = 611/619 (98%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 1 caaacctctatcatattcacaatatatttgactcccttggaacagaacattcaattatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacctctatcatattcacaatatatttgactcccttggaacagaacattcaattatat 260
Query: 61 atttttttcaaatgatgttctctgactagaggttattggatcaagaatattaaggtgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttttcaaatgatgttctctgactagaggttattggatcaagaatattaaggtgtat 320
Query: 121 gtctttgccaaaaaataaactgtggcattcatcatgacatagagtctgtcccatttgtct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctttgccaaaaaataaactgtggcattcatcatgacatagagtctgtcccatttgtct 380
Query: 181 tttc--tttttttttttcttcaagtctctaaagaaattaaagaagatctcagaagatgga 238
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctttttttttttttcttcaagtctctaaagaaattaaagaagatctcagaagatgga 440
Query: 239 aagatctcccatgttcttggattggcaggatcaacattgtaaaaatggctatcttgccaa 298
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaa 500
Query: 299 aagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaat 560
Query: 359 tagaaagggcaatcggcagattcatctggaataacaaaaaaccgaggatagcaaaaactc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaaagggcaatcggcagattcatctggaataacaaaaaaccgaggatagcaaaaactc 620
Query: 419 ttctcaaggataaaagaacctctggtggaatcaccatgccggacctaaaactgtactaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctcaaggataaaagaacctctggtggaatcaccatgccggacctaaaactgtactaca 680
Query: 479 gagcaattgtgatcaaaactgcatggtactggtatagtgacagacaagtagaccaatgga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcaattgtgatcaaaactgcatggtactggtatagtgacagacaagtagaccaatgga 740
Query: 539 acagaattgaagacccagagatgaatccacacacctatggtcacttgatctttgaaaagg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 acagaattgaagacccagagatgaatccacacacctatggtcacttgatctttgacaagg 800
Query: 599 gagctataaccatccagtg 617
|||| | ||||||||||||
Sbjct: 801 gagcaaaaaccatccagtg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
