BAC Information

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BAC

Clone NameMSMg01-387P12
Chromosome5 (Build37)
Map Location 41,923,095 - 41,923,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522
Downstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387P12.T7 (MSMg01no387_p12.b1)MSMg01-387P12.TJ (MSMg01no387_p12.g1)
ACCAG490577AG490578
length747817
length of high quality
(start - end)
402 (48 - 449)112 (84 - 195)
definitionCHROMAT_FILE: MSMg01no387_p12.b1 PHD_FILE: MSMg01no387_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:11 2005CHROMAT_FILE: MSMg01no387_p12.g1 PHD_FILE: MSMg01no387_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAAATTCTTATGCAAATGGATGGAACTAGAAAATATCATCG
TGAGTGAGGTAACCCAATCCCAAAAGAACACACATGGGATACACTGACGG
ATAAGTGGATATCAACCCAGAGCTCAGAATACCCAAGATACAATACAAAG
CTTGTCTTTATTCTGGATGGAGGCACTCTTCCTTGTCTCCATCATCTTTC
AATATATCAAGATCATCGCTTTCAACCTTGTCTCCAGTCCTATGTTGNGC
ATGTTTACATGAAATGTCACATTGTGCTTAATATTGCGATAATAATGAGT
GAAGCTACCTTTTCACAATAATCAATTTACAAATGAATGAGCCTGTGATA
AGCTTTATAAAGGACTTTGTAAAGTTATAAATAGTTTGTAATGAGGTGTA
TCTCANACTCTGTACTGTGTATGTGTAAATATATGCGTTTTTTCCTTTCT
TTTCTTTTCATGTGNGCGCGCGCGCGTGCGCGCCCCGCTCTCCCCTCCTC
CCCCTTCCCTCTCCTTCTCACCTCCCCTTTCCCTCCCTCTCCTTCCTTCC
CCTCCTCCTCCTTCCTCTTCCTTCTCCCCTTCTTTTCCCTCCTTTTCTCC
CTCCCATCCTCCTTTCCCTTCTTCCTCCTCCCCCTCCCTCCTTTTCCCTC
CCCTTTTTTTCCCTTCTCCCCCTTCCTACTGTTTCCCCCCCCCCCTT
NTTCGATGACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTACGTGCATTGAGTTGATGGCCTAGNCAGCCATCA
TTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCTTCAGTACAG
GGGAACGCCAGGGCCAAGAAGTAGGAGTGGGTGGGTAGGGGAGGNNNNGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGNNGNNNNNTT
TTTTTNGGGNNGGGGGGNGGGGGGGGGGGGCCTGCGTGGGCGNCGGGGCT
GTGCCGTCCTCTTTTTTTTCTCTTCTCTCTTCCCTTTTCCCCCTCTTTTT
TTTTTTTTTCTCTCCCTCGGGGGGGGGGGGCGCNCCTCCGCTTCCTCTTT
CTCTTCCCCCCCCCCCTCTCTTCCTTTTCTCCCCTCTCTTCCTTTGCTCC
GCCCCTCCCTTTCTCTTTCTCTTTTTCTTTTTCCCCGCCCCCTCTCCCCC
TCCCTCTTTGGTCTGCCCCCGCTTCTCGGCCCTCCGCTTTTTTTCCCCCC
CCCCTCCCTCTTTCTCTTTCTTTTGTCTTCCCCCTTTCCCGCTTTTCCGC
CCCCCCCTCCCTCTCCCCCTCTCGTTTCTCTCTCCTCTCCCCTCTGTTCT
TCCCCCCCCCCGCCCTTTGTCGCTCTTCCTTCCTTTCCTCTCTCCGTCTC
TCTCGGTCCCTTCCTCGAGGTCTCACCTGTTTCTTCCCTGGCCTTTCTTC
TCCCCTTGCCTCGCTCTTGCTGTCCCTATCTGGTCTTATATTCCGCTGGT
TCCCCCGTTCCTCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_p12.b1 MSMg01no387_p12.b1 CHROMAT_FILE:
MSMg01no387_p12.b1 PHD_FILE: MSMg01no387_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:11 2005
         (402 letters)



>mm_chr5_41922742_41923543
          Length = 802

 Score =  710 bits (367), Expect = 0.0
 Identities = 391/399 (97%), Gaps = 2/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaaattcttatgcaaatggatggaactagaaaatatcatcgtgagtgaggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaattcatgaaattcttatgcaaatggatggaactagaaaatatcatcgtgagtgaggta 692

                                                                       
Query: 65  acccaatcccaaaagaacacacatgggatacactgacggataagtggatatcaacccaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acccaatcccaaaagaacacacatgggatacactgacggataagtggatatcaacccaga 632

                                                                       
Query: 125 gctcagaatacccaagatacaatacaaagcttgtctttattctggatggaggcactcttc 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 631 gctcagaatacccaagatacaatacaaagcttgtctttactctggatggaggcactcttc 572

                                                                       
Query: 185 cttgtctccatcatctttcaatatatcaagatcatcgctttcaaccttgtctccagtcct 244
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 571 cttgtctccatcatctttcaatataccaagatcatcactttcaaccttgtctccagtcct 512

                                                                       
Query: 245 atgttgng-catgtttacatgaaatgtcacattgtgcttaatattgcgataataatgagt 303
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atgttg-gaaatgtttacatgaaatgtcacattgtgcttaatattgcgataataatgagt 453

                                                                       
Query: 304 gaagctaccttttcacaataatcaatttacaaatgaatgagcctgtgataagctttataa 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 gaagctaccttttcacaataatcaatttacaaatgaatgagcctgcgataagctttataa 393

                                                  
Query: 364 aggactttgtaaagttataaatagtttgtaatgaggtgt 402
           ||||||||||||||||||||||||||| |||||||||||
Sbjct: 392 aggactttgtaaagttataaatagtttctaatgaggtgt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)